Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2875 ATGGAATTCAAGAAACGCAAAACCGAAGAAAACGGCGACGCTAATTCTCCACCCTCATCCATCGACGCCGCCGTCATACCCCCCGCTCTCACCTCAGACGACATCCGCAAGATTCTCCAACCTTTCACTCAAGAACAACTACTCGACCTTCTCCAATCCGCCTCACTCCAACACCCTGACATCCTCGACGCCGTACGCTCTGTCGCCGACCGTGATACCACCCGCCGTAAACTCTTCGTCCGTGGCCTCTCCGGTGAAACCACCACCGAAACACTCCGCACCGTTTTCTCTTCCTATGGTGATCTAGATGAAGCGATTGTGATATTCGATAAGGCCACCGGAAGATCTAAGGGTTACGGTTTTGTTGTGTATCGACATGTCGACGGCGCTGTCTTAGCCCTAAAAGAGCCGAGCAAGAAAATCGATGGAAGAATGACGGTGACACAGCTTGCGGCGGCGGGTTCCACAGGCGGCGATGTTTCATCTCGGAAGGTTTTCGTCGGAAACGTTCCGTTTGAAGTTTCAGCGGAGAGTTTATTAAGTGAATTTTCGAAGTATGGTGAAATTGAAGAGGGTCCATTAGGGTTTGATAAAGCAAGTGGTAAAACAAGAGGTTTTGCTTTCTTTGTGTACAAAACTGAAGAGGGTGCGAAGAATTCGGTTGCGGAGTCTATGAAAACCGTTGATGGGCATCAAGTGATTTGCAAGTTTGCTGTTGATAACAAAAAGCCCAAGCCCGTGGGTCAAAACCCATCGGGCTTTCCGGTGGATAATTCTAATGTTAATTATCATCCACCTAATCCCACCATGATGCCGCCGCAGTATGGTGCTCCTCCTAATAGCTATGTGCAGCAACCTTATGGTAATCAGGTTCCTGCAGCTGGTGGATATGGACCTGGGCCTGTTCCTCATTATGGTGGGCCTGTAGCTGGACCTGGCCCTGTTCCCGGACCAAGAGGGCCTCAGACTGCTGTTGGTGGATACCCTGATGGTTCACAATATGGTTACCCGCAACAACCTATGCCGGTGCAGAGACCTCCCCCAGGAGGAATGTACCAGCCTTATTATTGA 1071 0.5033 MEFKKRKTEENGDANSPPSSIDAAVIPPALTSDDIRKILQPFTQEQLLDLLQSASLQHPDILDAVRSVADRDTTRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKEPSKKIDGRMTVTQLAAAGSTGGDVSSRKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQVICKFAVDNKKPKPVGQNPSGFPVDNSNVNYHPPNPTMMPPQYGAPPNSYVQQPYGNQVPAAGGYGPGPVPHYGGPVAGPGPVPGPRGPQTAVGGYPDGSQYGYPQQPMPVQRPPPGGMYQPYY* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2875 356 Gene3D - 4 157 IPR012677 -
Mtr4g2875 356 PANTHER GEO13361P1-RELATED 1 332 - -
Mtr4g2875 356 SUPERFAMILY RNA-binding domain, RBD 68 152 IPR035979 GO:0003676
Mtr4g2875 356 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 332 - -
Mtr4g2875 356 CDD RRM_RBM24_RBM38_like 76 151 - -
Mtr4g2875 356 MobiDBLite consensus disorder prediction 292 356 - -
Mtr4g2875 356 MobiDBLite consensus disorder prediction 1 24 - -
Mtr4g2875 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 144 IPR000504 GO:0003723
Mtr4g2875 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 231 IPR000504 GO:0003723
Mtr4g2875 356 SMART rrm1_1 77 149 IPR000504 GO:0003723
Mtr4g2875 356 SMART rrm1_1 164 236 IPR000504 GO:0003723
Mtr4g2875 356 MobiDBLite consensus disorder prediction 305 319 - -
Mtr4g2875 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 153 IPR000504 GO:0003723
Mtr4g2875 356 SUPERFAMILY RNA-binding domain, RBD 159 255 IPR035979 GO:0003676
Mtr4g2875 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 243 IPR000504 GO:0003723
Mtr4g2875 356 MobiDBLite consensus disorder prediction 340 356 - -
Mtr4g2875 356 Gene3D - 158 260 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2875 Mtr-Chr4 42460314 42462557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2875 151 249 C2H2 Transcription Factor Family AT2G19380 31.313 8.71e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2875 K12741 - gmx:100804230 408.297