Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2874 ATGGATTACTCTTTTTATGACAAAATTTATTCATCAGAGTATGATGATTTGGGCTTGTTCAATCCAACTTTGAATAACTTTGGAGCTTCCAATGGTGATTCTACTGGTAGGTTGTCATCACCACGTTCATTGGTTTTGGAGAGTGAGAAGGAAAAGGTGGTGGAGGGTCCTGTTACTGAAAATGTTGGTAAAGATGAGGTTTCTGAGGACAAAGGTTTAGCTTCTTTGAAGAATCATAGGGAAGCAGAGAGGAGAAGAAGGGAGAGAATAAATGGTCACCTTGGAACATTACGTGGTCTTGTGGCTTCCACTCATCAAAAGATGGATAAAGCCACAATACTTGCTGAAGTGATTAGTCAAGTGAAGGAATTGAAGAAGAATGCAATGGAAGCAAGCAAAGGTTTTCTCATTCCAACAGAAGTTGATGAAGTGAAAGTTGAACCATATGATATTAAATTAGGATATGGATGCATGTCTTACATAGCAACTATCTGTTGTGATTACCAACCTGAGATACTATGTGACCTCAAAAAAGCAATCGATGCACTTCAACTTCAACTAGTGAAGGCAGAAATGTCAACATTGGAAAGCAGGATGAAGAATATGTTTGTGTTTACATGTTGCAAAGGGAATAGTTTTAATGTTGAAGCATGTCAAAGTATTGCAAATGTTGTTCACAAGGCACTTGATTCTGTGTTGGAAAAGGCTTCTAACTCAATGGAATTCTCACTCAAAACTTCATATCCAAACAAGAGGAGAAGAATGTGCTTTGTTGAAACATCTACCTCTTCATGCAGCCATGCATCTTGTTCATGCTAA 819 0.3797 MDYSFYDKIYSSEYDDLGLFNPTLNNFGASNGDSTGRLSSPRSLVLESEKEKVVEGPVTENVGKDEVSEDKGLASLKNHREAERRRRERINGHLGTLRGLVASTHQKMDKATILAEVISQVKELKKNAMEASKGFLIPTEVDEVKVEPYDIKLGYGCMSYIATICCDYQPEILCDLKKAIDALQLQLVKAEMSTLESRMKNMFVFTCCKGNSFNVEACQSIANVVHKALDSVLEKASNSMEFSLKTSYPNKRRRMCFVETSTSSCSHASCSC* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2874 272 PANTHER TRANSCRIPTION FACTOR BHLH30 3 266 IPR045847 GO:0003700|GO:0006355
Mtr4g2874 272 Pfam Helix-loop-helix DNA-binding domain 78 124 IPR011598 GO:0046983
Mtr4g2874 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 124 IPR011598 GO:0046983
Mtr4g2874 272 SMART finulus 80 130 IPR011598 GO:0046983
Mtr4g2874 272 CDD ACT_UUR-ACR-like 163 229 - -
Mtr4g2874 272 MobiDBLite consensus disorder prediction 60 85 - -
Mtr4g2874 272 Gene3D - 69 133 IPR036638 GO:0046983
Mtr4g2874 272 PANTHER DNA BINDING PROTEIN-LIKE 3 266 - -
Mtr4g2874 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 126 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2874 Mtr-Chr4 42437356 42440835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2874 77 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.667 2.96e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g2874 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2874 - - gmx:100804756 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2874 4 42437356 42440835 Mtr4g2874 4 42437356 42440835 ECH
Mtr2g0483 2 4788341 4791078 Mtr4g2874 4 42437356 42440835 ECH