Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2853 ATGTCCGTTTTGGTTGTAACCGCCATGGATTTCGCCGTCCTCGGTTTTCTTATTCCCTCGCTCTGGGAGATCGAAGTCGCTTTCGCTGCCTCGCTTTTCGTTATTCTCGCGTATTGGTTCTTCACATTTAGAATCGCTGACCGTCACTCCGATCGATCACTTTCGGAAAATTCCGCCGGTGATTCCGCCGACGATAAAGTCAAGATTGGCCAGTCAAGAGGAGATTCTCAAGCCGGTTCGGCGTACCTGATTAAGTTAGAACTATTGGCTGCTAAAAATCTGATAGCTGCAAATTTAAATGGCACATCGGATCCTTACACCATCATCACATGCGGCAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCAAGAAATCCAATGTGGGGCGAAGAGTTCAATTTTTCTGTCGATGAACTTCCTGTCCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACCGTTCCAGTTGAAAGTGAAGGTCAAACTGGTGCAGTGTGGCATACTTTGGACAGCCCATCAGGGCAGGTTTGTCTTCATATAAAAACAGAAAAAATGTCTGCAAATTCTGCCAGGATAAATGGTTATGGCGGAGCCAACACTCGAAGAAGGATACCCTTGGAAAAACAGGAACCCACAGTAGTCCATCAAAAGCCAGGACCTCTTCAAACGATATTTGAGCTTCATCCAGATGAGGTTGTTGATCATAGTTACTCTTGTGCACTTGAAAGGTCATTCTTGTACCATGGTCGTATGTATGTCTCAACATGGCACATTTGTTTCCATTCCAATGTGTTCTCGAAGCAAATGAAGGTGCTTATTCCGTTTGAAGATATAGATGAGATTCGAAGGAGTCAACATGCATTTATTAATCCTGCTATAACAATTATTCTTCGTATGGGTGCCGGTGGACATGGTGTCCCTCCTTTGGGAAGTCCTGATGGTAGAGTCAGATATAAGTTTGCGTCATTTTGGAACAGGAATCATGCAGTTAGAAGTCTACAACGTGCTGTAAAGAACTTCCGTGAAATGTTGGAAACTGAGAAGAAGGAAAATGCAGAGTCAGAATTGCGTGCACATAGCAGTTCTGTTAGACGAAGTAACATAATGGATAAGGTTCCCGAAACCAGCATGCCAAAAGCTGGAAAACGTCAAACTTTTATCAAAGAAGAGGCTTTAGTTGGTATATACAATGATGTTTTCCCCTGCACAGCAGAGCAGTTTTTTAACTTATTGTTAAAGGACGATTCAAAATTTACTAGCAAGTATCGTTCAGCACGAAAGGATACTAATCTTGTGATGGGACAATGGCATACAGCAGAAGAATATGACGGTCAAGTCCGGGAGATAACCTTCAGATCCCTTTGTAACAGCCCTATGTGCCCGCCAGACACAGCCATTACTGAGTGGCAACATGTTGTTCTATCATCTGACAAGAAAAACCTGGTGTTTGAGACTGTGCAACAGGCACACGATGTTCCACTCGGGTCCTGTTTTGAGGTGCACTGTAAATGGGGTTTGGAGACAACTGGTGAAAGTTCATGTACTCTGGACATAAGAGTGGGTGCACATTTCAAGAAATGGTGTGTGATGCAATCCAAAATAAAATCAGGGGCAATCAATGAGTACAAGAAAGAAGTTGATGTGATGTTAGATGTTGCTCGTTCATATATAAAGCCGCATACTTCTGATGACGAGAATGATAAGGCATCTTCGCCCCCTGCGGCAACTTTGGAAAATTAA 1773 0.4303 MSVLVVTAMDFAVLGFLIPSLWEIEVAFAASLFVILAYWFFTFRIADRHSDRSLSENSAGDSADDKVKIGQSRGDSQAGSAYLIKLELLAAKNLIAANLNGTSDPYTIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLHIKTEKMSANSARINGYGGANTRRRIPLEKQEPTVVHQKPGPLQTIFELHPDEVVDHSYSCALERSFLYHGRMYVSTWHICFHSNVFSKQMKVLIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHAVRSLQRAVKNFREMLETEKKENAESELRAHSSSVRRSNIMDKVPETSMPKAGKRQTFIKEEALVGIYNDVFPCTAEQFFNLLLKDDSKFTSKYRSARKDTNLVMGQWHTAEEYDGQVREITFRSLCNSPMCPPDTAITEWQHVVLSSDKKNLVFETVQQAHDVPLGSCFEVHCKWGLETTGESSCTLDIRVGAHFKKWCVMQSKIKSGAINEYKKEVDVMLDVARSYIKPHTSDDENDKASSPPAATLEN* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2853 590 ProSiteProfiles C2 domain profile. 65 180 IPR000008 -
Mtr4g2853 590 Gene3D C2 domain 68 195 IPR035892 -
Mtr4g2853 590 MobiDBLite consensus disorder prediction 570 590 - -
Mtr4g2853 590 Pfam C2 domain 85 179 IPR000008 -
Mtr4g2853 590 Coils Coil 341 368 - -
Mtr4g2853 590 CDD C2 84 180 - -
Mtr4g2853 590 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 11 584 - -
Mtr4g2853 590 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 11 584 IPR044655 -
Mtr4g2853 590 ProSiteProfiles VASt domain profile. 402 572 IPR031968 -
Mtr4g2853 590 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 82 193 IPR035892 -
Mtr4g2853 590 SMART C2_3c 83 179 IPR000008 -
Mtr4g2853 590 MobiDBLite consensus disorder prediction 53 71 - -
Mtr4g2853 590 Pfam VAD1 Analog of StAR-related lipid transfer domain 406 551 IPR031968 -
Mtr4g2853 590 MobiDBLite consensus disorder prediction 53 73 - -
Mtr4g2853 590 PRINTS C2 domain signature 99 111 IPR000008 -
Mtr4g2853 590 PRINTS C2 domain signature 123 136 IPR000008 -
Mtr4g2853 590 PRINTS C2 domain signature 144 152 IPR000008 -
Mtr4g2853 590 Pfam GRAM domain 233 301 IPR004182 -
Mtr4g2853 590 SMART gram2001c 230 296 IPR004182 -
Mtr4g2853 590 Gene3D - 231 350 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2853 Mtr-Chr4 42212653 42224272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2853 83 168 C2H2 Transcription Factor Family AT4G21160 25.581 1.38e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2853 - - gmx:100789923 999.579