Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2823 ATGGCTGCACAAACCAACGGTGGAGATCTGAATCAGAACCAAAACCAGAACCAGAACCAGCACCAGCAACAGCAACAGCAACAGTGGGCTCAGCAGCAGCCACATCAGTATCAACAACAATGGATGTCTATGCAGTATCCAGCTACTGCTATGGCTATGATGCAACAGCAGATGATGATGTATCCTCAGCATTATATGCCGTATGTACATCCTCATCATTATCAGCAGCAGCCACCTCATCAACAACAAGTGTCGCCGCCGCCATCGGCGCATAGTCATCATGGCGGCCATCAACAGCATCAGTATCAGCAGCATCAGCAGAAGCAGCTGGCACCTGAAGAGATCAGGACGATCTGGCTTGGTGACCTTCATCATTGGATGGATGAGACTTTTCTTCATAACTGCTTTGCTCATACTGGAGAGGTTGCATCGGCCAAGGTCATACGTAATAAGCAAACTGGTCAATCGGAGGGATATGGATTTGTCGAGTTCTATACGCGAGCAATGGCTGAGAAAGTCTTGCAGAACTTTAATGGTACTATGATGCCAAATACCGATCAGGCGTTTCGTCTGAATTGGGCTACATTCAGCGCTGCTGGTGGTGGTGGTGAAAGGCGTTCTTCTGAGGCTACTTCTGATCTCTCTGTTTTTGTCGGAGACTTGGCCATAGATGTTACTGATGCTATGCTTCAAGAGACGTTTGCTAGCAAATTCTCATCTATTAAGGGAGCAAAAGTTGTCATTGACTCTAATACTGGTCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAGTGAAAGGACAAGAGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGAGTAGGTGTTGCAACACCCAAAAAAACTTATGGCAATCCACAACAATATTCTTCACAAGCTGTAGTGTTGGCTGGTGGTGGTGGACACTCCAATGGTGCCATGGCCCAAGGTTCCCAATCTGAAGGGGATTCTAACAACACAACGATATTTGTTGGAGGACTTGACTCTGACATTAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGATGTTATCTCTGTGAAAATCCCAGTCGGTAAAGGATGTGGTTTTGTTCAACTTGCTGACAGAAAGAATGCCGAGGAAGCAATTCAGGGATTGAATGGAACAGTGATTGGAAAGCAGACAGTGCGCCTTTCTTGGGGTCGTAGTCCAGGAAATAAGCATTGGAGGAATGACTCTAATGGTTATGGAGGTCATGGATATGGTGGCCATGGATATGGAAGTAATGGATATGCTGCTAGACAAAATCAGGATATAGCTATGCAACCCGCTGCTGCAGTTCAAGGGGCTTCCTAA 1365 0.4564 MAAQTNGGDLNQNQNQNQNQHQQQQQQQWAQQQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQQQPPHQQQVSPPPSAHSHHGGHQQHQYQQHQQKQLAPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIPVGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHWRNDSNGYGGHGYGGHGYGSNGYAARQNQDIAMQPAAAVQGAS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2823 454 SUPERFAMILY RNA-binding domain, RBD 81 198 IPR035979 GO:0003676
Mtr4g2823 454 CDD RRM3_NGR1_NAM8_like 333 404 - -
Mtr4g2823 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 285 IPR000504 GO:0003723
Mtr4g2823 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 185 IPR000504 GO:0003723
Mtr4g2823 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 399 IPR000504 GO:0003723
Mtr4g2823 454 Gene3D - 115 195 IPR012677 -
Mtr4g2823 454 Gene3D - 315 441 IPR012677 -
Mtr4g2823 454 MobiDBLite consensus disorder prediction 75 110 - -
Mtr4g2823 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 406 IPR000504 GO:0003723
Mtr4g2823 454 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 27 453 - -
Mtr4g2823 454 CDD RRM1_SECp43_like 117 197 - -
Mtr4g2823 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 196 IPR000504 GO:0003723
Mtr4g2823 454 SUPERFAMILY RNA-binding domain, RBD 212 319 IPR035979 GO:0003676
Mtr4g2823 454 SMART rrm1_1 215 289 IPR000504 GO:0003723
Mtr4g2823 454 SMART rrm1_1 117 192 IPR000504 GO:0003723
Mtr4g2823 454 SMART rrm1_1 335 402 IPR000504 GO:0003723
Mtr4g2823 454 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 27 453 - -
Mtr4g2823 454 MobiDBLite consensus disorder prediction 71 110 - -
Mtr4g2823 454 MobiDBLite consensus disorder prediction 1 31 - -
Mtr4g2823 454 SUPERFAMILY RNA-binding domain, RBD 325 433 IPR035979 GO:0003676
Mtr4g2823 454 CDD RRM2_SECp43_like 213 292 - -
Mtr4g2823 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 293 IPR000504 GO:0003723
Mtr4g2823 454 Gene3D - 197 302 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2823 Mtr-Chr4 41897746 41902217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2823 118 413 Eukaryotic Initiation Factors Gene Family AT4G34110 29.508 9.76e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2823 - - mtr:MTR_4g086600 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2823 4 41897746 41902217 Mtr4g2823 4 41897746 41902217 ECH