Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2819 ATGGATCAGGGAACAAGTAAAGGTAGTGGTGAAATGTTGGATCATGTTGATAAAGGGGTTGATAAGAATTTGATTAATTTGGTTGAAGGCGTTGCAACTGATGCAGGAGCTGGACATAGTTTGGGTGTCAGGGTTAGTATATGCAGTGAAGATCGGAATTCAGAAGAGACGTGCAATGATCTTGTATTGAATGAGGAGTTAGAGGAGAAAGCTTTAGAAGTTAGGAGTCAGAACATTGGTGGTGATCCTGAAAAAATCGACAATGAATTGCATAGTGTTGATCAAGGGACTAGTTATAATTCGCTTAATCGGGAAACACTAGAGACCTGTATTGTAATAGATTCTTCTGCTCAAGTTGAACGTGTCACTGTCAATGGAGATAATAGAAAATTGGAAGCTAAAACTAATGAATCAGGGCTGCGCAAGTTATCAATAAAAGCACCAAAAGGGGTGTCTGAGACCGATAAAAATTCATGTGTGATTGATATGAACTGTGGCACATGTGAAGGTTTTGGTGAAAATTTGGATGACGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCGTTAGAAGCAACTGCTGTTGGCACTCCAAATATTGCTGATAAAAGTACAGGTTTGATTATGCTTGGTTGTGCATGTAAAGATGAGCTAGGAATCGCACACAGCCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGCGAAATATGTGGCGAGACTGCCAAAAACGTGTCCGATGTTACTGCTAATGCATTCATGGAAGAATGGTGTGAAAGTGGATTCACTGACAATGATAGTACGTCACCCCGTAGGTTGGTTGGATGCTGGCGCGGGCAGCCATTCTGCAACTTCTTGATGGTGTGTCTGGTAATAGCTTTTGTTCTGCCATGGTTCTTTCATGTGAAGATGTTCTAG 933 0.4169 MDQGTSKGSGEMLDHVDKGVDKNLINLVEGVATDAGAGHSLGVRVSICSEDRNSEETCNDLVLNEELEEKALEVRSQNIGGDPEKIDNELHSVDQGTSYNSLNRETLETCIVIDSSAQVERVTVNGDNRKLEAKTNESGLRKLSIKAPKGVSETDKNSCVIDMNCGTCEGFGENLDDEMICRICHLASGQPLEATAVGTPNIADKSTGLIMLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVSDVTANAFMEEWCESGFTDNDSTSPRRLVGCWRGQPFCNFLMVCLVIAFVLPWFFHVKMF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2819 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 248 IPR013083 -
Mtr4g2819 310 PANTHER ZINC FINGER, RING-CH-TYPE 1 310 - -
Mtr4g2819 310 Pfam RING-variant domain 201 243 IPR011016 GO:0008270
Mtr4g2819 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 310 - -
Mtr4g2819 310 ProSiteProfiles Zinc finger RING-CH-type profile. 173 250 IPR011016 GO:0008270
Mtr4g2819 310 SUPERFAMILY RING/U-box 177 246 - -
Mtr4g2819 310 SMART ringv_2 180 244 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2819 Mtr-Chr4 41862786 41872488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2819 161 309 C3H Transcription Factor Family AT5G05830 39.103 2.30e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2819 - - gmx:100791129 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2819 4 41862786 41872488 Mtr4g2819 4 41862786 41872488 ECH