Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2802 ATGAACATGAACTACTCCTCTTCTTCCTTCTCCGCCACTACACTCACCTCCGATCAAGAACTCTCTGTCATCGTCTCTGCCTTAACCAATGTCGTCTCCGGCTCCACCTCCACCGAATTTCACCTCCCAAATCCCGCCATCGGAAGCAGCAGCAGCAGCAGCTTAGAAAGAATTGTTCCACCTGCGAACATAGAAACCTGCCAGGAATGCAACATTGCAGGATGCTTAGGATGCGATTTCTTCCCAGAAGAGAAAAAACAAAAACAAAAGAGAGCTAAGAAGAAGTACAGAGGAGTGAGACAAAGACCATGGGGTAAATGGGCTGCTGAAATTCGTGACCCGAGACGTGCCACCCGTGTTTGGCTCGGAACATTTTCCACGGCGGAGGAAGCTGCCAGAGCTTATGACAATGCTGCCATCGAGTTCCGTGGGCCGAGGGCCAAACTCAATTTTCCAATGGTTGATGATTCACTTAAGCAGTCAGAAGTGGTTGCTCCTGATTTAGAGAATGTAAAAGATGAGAATGAGAATGAGAACGAGAATATGAATCAAGAAATGCAAAGTGAGACAAATATTGGATTTGGGAATAATATGGATTGTGATTTTTGGGATAGGCTTGGGGAAACTGATTTTCAACAACTGATGAGGTTTATGGATTTTGGTGGAGATTCTTCTGATTCCAGAACTGGGAACACTTTTAATTAG 705 0.4511 MNMNYSSSSFSATTLTSDQELSVIVSALTNVVSGSTSTEFHLPNPAIGSSSSSSLERIVPPANIETCQECNIAGCLGCDFFPEEKKQKQKRAKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFSTAEEAARAYDNAAIEFRGPRAKLNFPMVDDSLKQSEVVAPDLENVKDENENENENMNQEMQSETNIGFGNNMDCDFWDRLGETDFQQLMRFMDFGGDSSDSRTGNTFN* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2802 234 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 230 - -
Mtr4g2802 234 Coils Coil 165 192 - -
Mtr4g2802 234 SUPERFAMILY DNA-binding domain 95 153 IPR016177 GO:0003677
Mtr4g2802 234 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700|GO:0006355
Mtr4g2802 234 Pfam AP2 domain 95 144 IPR001471 GO:0003700|GO:0006355
Mtr4g2802 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 8 230 - -
Mtr4g2802 234 SMART rav1_2 95 158 IPR001471 GO:0003700|GO:0006355
Mtr4g2802 234 CDD AP2 96 152 IPR001471 GO:0003700|GO:0006355
Mtr4g2802 234 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Mtr4g2802 234 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Mtr4g2802 234 Gene3D AP2/ERF domain 94 154 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2802 Mtr-Chr4 41708771 41710433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2802 6 167 AP2-EREBP Transcription Factor Family AT4G34410 47.475 1.75e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g2802 AP2 9.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2802 - - ccaj:109799734 264.618