Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2784 ATGGCTAACCCAAGCAGAAATTCTACACAAACAATGTCGTTGGACTCCATGGAACAGAAGGGGAAAAATATTACTGAATCTAATGCAAGCATAAGTCAATGTCCTTTAAGCCAGCAACACCGTAACTCCTTAGATGGTCCAGTAGCTATCCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGCCCAGATGATGTGGCAGGTAACATAAGAATGGCTCTGCAGGTGCACCCAGTAATTCAAGGAGCTGTTACGACATTTTCTGCTTATGGAGATTTCAATTCTTTCCCGAGGCGACTTAGAGAGGGCTGCCAGAGAACCGGTGTTAAACTGATTGATGTTCCCAATGGGAGAAAAGATGCTGCTGACAAAGCGATCTTGGTTGACATGTTCTTATTTGCTCTTGACAATCCTCCACCGTCCTCTATCATGCTAATCTCTGGAGACGTTGATTTTGCTCCAGCACTCCACATTCTTGGTCAGCGTGGATACACTATAATTCTTGTCATCCCTGCTGGGGTTGGTGTTTCATCTGCTCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCAATTGTGGCTCGTGGAGAAGGTTTTGTTCCCCCTTCAAAGGCTTTGGTGGCACCCCGTGGAGGTTCAGTTGAGCTTGCTGGATATTTGATGGGATGCCATATCAACAATGACAACACTGAGGGACAAAATGAAGAAGAAGCGATAGTTTATAGAGGGATGTCACAGAGCTATTACAACTCAAGGGAATTCTCAATGGTATCACAATCTCTGTCGGAATATAACTCACCATACATGCCTTGCTTGCCAACATCTATGAGATCTTATAGCCTTCCATCTGGAGTGAATGATGTTGCAGGAGGACCTATTCCTTATAGCGACAATACTGAATGCCAGATGTGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGTCAGCTGGTAAGGTTGCTCGAACTTTCTGGAGGATGCGTGCCCCTGGTCCGAATTCCAGCAGAGTACCAGAAAATTTATGGTAAGACACTTTTTATATCTGATTATGGGGCATTCAAGTTGGTCGATCTTTTCAAAAAAATGGATGATGCTATTTCTGTGGAAGGGAAAGGGGCTCGCAGATTTGTATATCTCAAAAACAGGAAGGGAGGCCCAAGTGCTCCTCAGGTGTCTCTTGCAAAGAAAGATAAGAAAGGAAAAAGGGAACTGGAAGAGAATGCAAATGTTGTCAATGGTAGCTGCTCTTCAGATGAGTTGTCAGATGAAGAAAGAGTTGTTGTAGAAGAACATGATGAAAGAAGTTTTACAGGAAAGGGTAATAAGGGGAGAGCAGTCAGATGTGAAATTGATGGCAGTGTTGAGCAGTTTAAGTGTGAGCTGCAGGAGATTCTGGTCAGCTATTCCTGTCGGATACTTCTAAGTTGTTTTGAGGCTGTATACCAGCAACGATACAAGAAACAGTTGGAATATCAGAGATATGGTGTGGATAAGCTGGAGGATTTGTTGGAGAAAGTGAGTGATGTGGTAACATTGCACGAGGAACCAGTAAGCAAGAGGAAATTCCTGGCTGCTGTCGATGCTTAG 1593 0.4394 MANPSRNSTQTMSLDSMEQKGKNITESNASISQCPLSQQHRNSLDGPVAILWDIENCPVPSDVRPDDVAGNIRMALQVHPVIQGAVTTFSAYGDFNSFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTIILVIPAGVGVSSALCNAGKFVWDWPIVARGEGFVPPSKALVAPRGGSVELAGYLMGCHINNDNTEGQNEEEAIVYRGMSQSYYNSREFSMVSQSLSEYNSPYMPCLPTSMRSYSLPSGVNDVAGGPIPYSDNTECQMWVQPGDLNGLKGQLVRLLELSGGCVPLVRIPAEYQKIYGKTLFISDYGAFKLVDLFKKMDDAISVEGKGARRFVYLKNRKGGPSAPQVSLAKKDKKGKRELEENANVVNGSCSSDELSDEERVVVEEHDERSFTGKGNKGRAVRCEIDGSVEQFKCELQEILVSYSCRILLSCFEAVYQQRYKKQLEYQRYGVDKLEDLLEKVSDVVTLHEEPVSKRKFLAAVDA* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2784 530 Gene3D - 40 192 - -
Mtr4g2784 530 CDD LOTUS 312 381 - -
Mtr4g2784 530 CDD LOTUS 456 518 - -
Mtr4g2784 530 CDD PIN_limkain_b1_N_like 47 173 - -
Mtr4g2784 530 Pfam NYN domain 47 187 IPR021139 GO:0004540
Mtr4g2784 530 PANTHER - 30 525 - -
Mtr4g2784 530 MobiDBLite consensus disorder prediction 1 21 - -
Mtr4g2784 530 ProSiteProfiles OST-type HTH domain profile. 311 383 IPR025605 -
Mtr4g2784 530 ProSiteProfiles OST-type HTH domain profile. 455 529 IPR025605 -
Mtr4g2784 530 Gene3D - 310 381 IPR041966 -
Mtr4g2784 530 Gene3D - 453 522 IPR041966 -
Mtr4g2784 530 PANTHER LIMKAIN B LKAP 30 525 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr4g2784 530 Pfam OST-HTH/LOTUS domain 455 518 IPR025605 -
Mtr4g2784 530 Pfam OST-HTH/LOTUS domain 313 378 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2784 Mtr-Chr4 41524663 41528234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2784 44 198 C2H2 Transcription Factor Family AT5G61190 42.581 1.74e-29 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2784 4 41524663 41528234 Mtr4g2784 4 41524663 41528234 ECH