Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2776 ATGCGTGGCTGTTTAGAACCATTAGATTTAGGGGTTCAAATTCCTTACCACTTCAGATGTCCAATCTCGCTCGAACTCATGCGAGACCCAGTGACCGTCTCCACCGGTCAAACCTACGACCGAAATAGCATCGAGTCGTGGGTTAACACCGGTAACACGACGTGTCCGGTTACCCGGACCAATCTCACAGATTTCACCTTCATACCAAATCACACCCTCCGCCGTTTAATCCAAGATTGGTGCGTTTCCAACCGCGCTTTTGGAGTTCAGCGGATTCCAACACCTAAACAACCCGCAGACGCTGCTCTTGTTCGTTCTTTACTTAACCAAATATCTTCACATTCTGCCCCTACTCAACTACGTCTCAACTCGCTCCGGCGACTCAGATCGTTAACTCGTGACTCGGAGTATAACCGTTCTCTTATATCCTCTCTCAACGTTCGGAATATTATATTACCTATTCTTTTTAACAACGGTTTAGACGAGTTAAAAAATGAGTCACTCGCTTTAATAGTTCTATTTCCACTCAGTGAGTCAGAATGTACTTCACTCGCTTCCGATTCAGATAAGATTAACTACCTTACAAGTCTTCTTTCACATGATTCGTTCGATGTTCGAGTTAACTCAGCAGCGTTGATTGAAATCATCGTCGCCGGAACTCACTCGCCGGAGATTCGTCTTCAGGTGAGCAATGTTGACGGGATCTACGACGGTGTTGTTGAGATATTGAAGAATCCGATCTCCTATCCACGTGCACTGAAGATAGGAATTAAAGCTTTGTTCGCTTTATGTTTGGTGAAACAAACGCGCCACCGTGCTGTTTCCGCCGGTGCACCTGTAGTACTTATTGACCGGCTTGCTGATTTCGAGAAGTGTGATGCTGAGAGAGCATTAGCAACGGTGGAGTTGTTATGCCGTGTACCAGCTGGTTGCGCGTCGTTTGCCGGTCATGCTCTCACGGTGCCGATGCTTGTGAAGATAATATTAAAGATATCGGATCGTGCGACGGAGTACGCAGCCGGAGCACTCATGGCGCTGTGTTCGGAATCGGAACGGTGTCAACGAGAAGCAGTTGCGGCGGGGGTGCTGACTCAGCTTTTGCTTCTGGTGCAGAGTGATTGTACTGAGAGAGCGAAGAGGAAGGCGCAACTGTTGCTAAAGCTTCTTCGGGATTCGTGGCCTCAAGATTCCGTTGGAAATTCTGATGATTTTGCATGCAGACATTTTGACTGA 1233 0.4753 MRGCLEPLDLGVQIPYHFRCPISLELMRDPVTVSTGQTYDRNSIESWVNTGNTTCPVTRTNLTDFTFIPNHTLRRLIQDWCVSNRAFGVQRIPTPKQPADAALVRSLLNQISSHSAPTQLRLNSLRRLRSLTRDSEYNRSLISSLNVRNIILPILFNNGLDELKNESLALIVLFPLSESECTSLASDSDKINYLTSLLSHDSFDVRVNSAALIEIIVAGTHSPEIRLQVSNVDGIYDGVVEILKNPISYPRALKIGIKALFALCLVKQTRHRAVSAGAPVVLIDRLADFEKCDAERALATVELLCRVPAGCASFAGHALTVPMLVKIILKISDRATEYAAGALMALCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSVGNSDDFACRHFD* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2776 410 SUPERFAMILY RING/U-box 12 89 - -
Mtr4g2776 410 CDD RING-Ubox_PUB 18 59 IPR045210 -
Mtr4g2776 410 Gene3D - 93 401 IPR011989 -
Mtr4g2776 410 PANTHER WDSAM1 PROTEIN 4 406 IPR045185 GO:0061630
Mtr4g2776 410 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Mtr4g2776 410 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Mtr4g2776 410 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Mtr4g2776 410 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 406 - -
Mtr4g2776 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Mtr4g2776 410 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2776 Mtr-Chr4 41472007 41473674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2776 1 404 U-box Gene Family AT1G49780 65.133 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2776 - - gmx:100810176 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2776 4 41472007 41473674 Mtr4g2776 4 41472007 41473674 ECH