Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2775 ATGGCCAAGAGTGTAGATCATGATCAAGGTGTTCAGACAGGTTTCATTTGGGAAAATCATCTATGGGGTGATCTTCCAAATTCTGATCATAACTTAGGTGAGAGTAGCAAAAAAAGAGTAGACACAAAACCATTGAACCAGAATGAAGGAATCAATGAAGCAGAAGCTCCCGTGAGCAAGAAGAGAAATTGGGGTGGGGTTGTAATTAGAAGTGAGAATAATATTACAACTGGTGAAGAAAAAGATAAAAAGTATCGTGATTTTGATCATGAAATGCACATTTTGACTGAAAGAGAAAGGAGAAAGAAAATGAGGAACATGTTCGATAGCCTTCATGCCTTGCTTCCTGAACTTCCTTCTAAGGCTGATAAATCAACCATTGTGGATGCAGCAGTGAAGCACATTAAAAATCTAGAAGAAATTAAGGAAAAGCTTGAAAAGAAGAAGCAAGAAATGCTCAAATCTGTATCCCCACTTGGGAGTGAGTCATCTGTGATCAACTCACAGTGGCATCCCTATGAATCAAGGGAAGCATTCTTAGCTGATCAAGGATCCTCAAGTTATAATAATAACTTGTCTAATGCAATTGTAACTTCAAATCCTTCAAATGCATTTTCAATATCTCCACCACAACAAGTAGGTTTTCAAACATGGTCTTCTCAAAATGTTGTGTTGAACATATGTGGTGGTGAAGCACAATTTTGCATTTGTTCAACTAAGAAGCCTGGTCTCTTGACCACAATTGCTTTGGTGTTGGAGAAACATAAGATTGATGTTATTTCTGCCAACATTATGTGCAATGCAAATGGAAACTTCTACATGATTATGGCCCATGCAAAACAAGCTTCACTTGGCGCAAACTCGATGGAGGAAACTTACAAGCAAGCAGCTTTAGAAATTATGACGAGGATCGCTTAA 918 0.3802 MAKSVDHDQGVQTGFIWENHLWGDLPNSDHNLGESSKKRVDTKPLNQNEGINEAEAPVSKKRNWGGVVIRSENNITTGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLPELPSKADKSTIVDAAVKHIKNLEEIKEKLEKKKQEMLKSVSPLGSESSVINSQWHPYESREAFLADQGSSSYNNNLSNAIVTSNPSNAFSISPPQQVGFQTWSSQNVVLNICGGEAQFCICSTKKPGLLTTIALVLEKHKIDVISANIMCNANGNFYMIMAHAKQASLGANSMEETYKQAALEIMTRIA* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2775 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 138 IPR011598 GO:0046983
Mtr4g2775 305 CDD bHLH_AtbHLH_like 93 138 IPR045239 -
Mtr4g2775 305 Gene3D - 86 159 IPR036638 GO:0046983
Mtr4g2775 305 Pfam Helix-loop-helix DNA-binding domain 91 139 IPR011598 GO:0046983
Mtr4g2775 305 PANTHER TRANSCRIPTION FACTOR BHLH95 11 302 - -
Mtr4g2775 305 Coils Coil 128 155 - -
Mtr4g2775 305 PANTHER - 11 302 IPR044278 GO:0003700|GO:0006355|GO:0009960
Mtr4g2775 305 SMART finulus 94 144 IPR011598 GO:0046983
Mtr4g2775 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 164 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2775 Mtr-Chr4 41455991 41458314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2775 12 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.688 5.95e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g2775 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2775 - - mtr:MTR_4g085700 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2775 4 41455991 41458314 Mtr4g2775 4 41455991 41458314 ECH