Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2774 ATGGCCATGAGTGTAGATCATGATCAAGGTGTTCAGACAGGTTTCATTTGGGAAAATCATCCATGGGGTGTTCTTCCAATTTCTGATAACTTAGGTGAGAGTAGCAAAAAAAGAATAGACACAAAACCACTGAACCAGAAAGAAGGAATCAACGAAGGAGATGCTCCGGTGAGGAAGAAGAGAAGTCGGGGTGGGGTTGTAATTAGAAGTGAGAATAACATTACAACTGATGAAGGAGAAGATAGAAAGTATCGTGATTTTGATCATGAAATGCACATTTTGACTGAAAGAGAAAGGAGAAAGAAAATGAGGAACATGTTTGATAGCCTTCATGCCTTGCTTCCTGAACTTCCTTCTAAGGCTGATAAATCAACCATTGTAGATGCAGCAATGAAGCACATTAAAAATCTAGAAGAAATTAAGGAAAAGCTTGAAAAGAAGAAGCAAGAAATGCTCAAATCTGTATCCCCACTTGGGAGTGAGTCATCTGTGATCAACTCACAGTGGCATCCCTATGAATCAAGGGAAGCATTCTTAGCTGATCAAGGATCCTCAAGTTATAATAATAACTTGTCTAATGCAATTGTAACTTCAAATCCTTCAAATGCATTTTCAATATCTCCACCACAACAAGTAGGTTTTCAAACATGGTCTTCTCAAAATGTTGTGTTGAACATATGTGGTGGTGAAGCACAATTTTGCATTTGTTCAACTAAGAAGCCTGGTCTCTTGACCACAATTGCTTTGGTGTTGGAGAAACATAAGATTGATGTTATTTCTGCCAACATTATGTGCAATGCAAATGGAAACTTCTACATGATTATGGCCCATGCAAAACAAGCTTCACATGACGCAAATTCAATGAAGGAAACATACAAGCATGCGGCTGGAGAAATTATGATGTGGATCGCTTAG 915 0.3836 MAMSVDHDQGVQTGFIWENHPWGVLPISDNLGESSKKRIDTKPLNQKEGINEGDAPVRKKRSRGGVVIRSENNITTDEGEDRKYRDFDHEMHILTERERRKKMRNMFDSLHALLPELPSKADKSTIVDAAMKHIKNLEEIKEKLEKKKQEMLKSVSPLGSESSVINSQWHPYESREAFLADQGSSSYNNNLSNAIVTSNPSNAFSISPPQQVGFQTWSSQNVVLNICGGEAQFCICSTKKPGLLTTIALVLEKHKIDVISANIMCNANGNFYMIMAHAKQASHDANSMKETYKHAAGEIMMWIA* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2774 304 Coils Coil 127 154 - -
Mtr4g2774 304 MobiDBLite consensus disorder prediction 30 62 - -
Mtr4g2774 304 PANTHER - 11 302 IPR044278 GO:0003700|GO:0006355|GO:0009960
Mtr4g2774 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 163 IPR036638 GO:0046983
Mtr4g2774 304 MobiDBLite consensus disorder prediction 33 62 - -
Mtr4g2774 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 137 IPR011598 GO:0046983
Mtr4g2774 304 PANTHER TRANSCRIPTION FACTOR BHLH95 11 302 - -
Mtr4g2774 304 SMART finulus 93 143 IPR011598 GO:0046983
Mtr4g2774 304 Gene3D - 78 165 IPR036638 GO:0046983
Mtr4g2774 304 CDD bHLH_AtbHLH_like 92 137 IPR045239 -
Mtr4g2774 304 Pfam Helix-loop-helix DNA-binding domain 90 138 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2774 Mtr-Chr4 41443471 41445244 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2774 88 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 37.652 2.01e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g2774 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2774 - - mtr:MTR_4g085700 526.168