Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2768 ATGGCCCAGGTTCAGGTTCAGCCTCAGAATGCGATGACCGGTCCTAACGGTGGTGCGGCGGCTGCAGCGGCGGCCGGTGGCGGTGGAAATTTTGTGACGACGTCGCTTTACGTCGGAGATCTTGATATGAATGTGACGGATTCTCAGCTGTATGATTTGTTCAATCAATTGGGTCAGGTTGTGAGTGTTAGGGTTTGCAGGGATTTGACTACTAGGAGGTCACTTGGTTATGGTTATGTTAACTATAGCAATCCACAAGATGCTGCGAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAACAACAGGCCCATTCGCATTATGTATTCACATCGTGATCCTAGTATCCGCAAAAGTGGTCAAGGAAATATATTTATTAAGAATTTGGACAAGGCGATTGACCATAAGGCGTTGCATGATACCTTTTCTTCATTTGGGAATATCCTTTCTTGCAAGGTAGCTGTGGATGGATCTGGCCAATCAAAAGGCTACGGCTTTGTTCAATTTGATACTGAGGAGGCTGCTCAAAAAGCTATTGAAAAGCTTAATGGTATGCTTTTGAATGATAAGCAAGTTTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAGAGCACAGGTGACAGGGCAAAATTCAACAATGTTTTTGTTAAGAATCTCTCAGAATCAACTACTGACGATGAGTTGAAGAAGACTTTTGGTGAATTTGGAACAATTACCAGTGCTGTAGTAATGAGGGATGGGGATGGGAAATCAAAGTGCTTTGGATTTGTGAACTTTGAGAGTACCGATGATGCTGCTAGAGCTGTTGAGGCTCTTAATGGGAAAAAAATTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAAAAATCTGAAAGGGAGCATGAACTGAAGATTAAGTTTGAGCAGAGCATGAAAGAAGCTGCGGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTGGACGATAGCATTGCTGATGAAAAACTTAAGGAGCTGTTCTCCTCTTATGGCACAATTACCTCTTGCAAGGTAATGAGAGACCCCAATGGCGTAAGTCGAGGATCTGGGTTTGTTGCATTCTCTACTCCCGAGGAGGCATCTAGAGCTCTCTTGGAGATGAATGGCAAAATGGTGGCAAGCAAACCTCTGTATGTGACTCTGGCTCAGAGGAAAGAAGATAGAAGAGCTAGGCTTCAGGCTCAATTTGCTCAAATGCGTCCTGTCTCGATGCCACCATCCGTTGCTCCTCGCATGCCTATGTATCCCCCTGGTGGTCCAGGTATGGGTCAACAAATATTTTATGGTCAAGGCCCTCCTGCCATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTGCCTGGAATGAGACCTGGTGGGGCACCTGTGCCAAACTTCTTTGTGCCAATGGTTCAGCAGGGACAGCAAGGGCAGCGTCCTGGTGGAAGACGTGGAGGTGGAGTCCAGCAGTCCCAGCAGCCAGTTCCGCTTATGCCACAACAGATGCTCCCTAGGGGACGTGTATATCGCTATCCTCCTGGAAGGGGCATGCCTGATGGTCCCATGCCTGGAGTTGCTGGAGGCATGTATTCTGTTCCTTATGACGTGGGTGGGATGCCCATTCGCGATGCATCACTTTCCCAGCAAATTCCTATTGGTGCTTTGGCTTCTCATCTGGCTAATGCATCTCCCGAGCAGCAGAGAACGATGCTGGGTGAGAATCTTTACCCACTTGTGGAACAATTGGAGCCCGACAATGCTGCCAAAGTTACTGGTATGCTTCTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTCGAGTCACCAGAGGCCCTGAAAGCAAAGGTGGCAGAGGCGATGGATGTCCTTAGGAATGTTGCGCAGCAGCAGGCTGGTGGTGCTGCTGATCAGTTGTCTTCATTGTCACTTAATGACAGCCTTGCTTCTTAA 1965 0.4718 MAQVQVQPQNAMTGPNGGAAAAAAAGGGGNFVTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQMRPVSMPPSVAPRMPMYPPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQRPGGRRGGGVQQSQQPVPLMPQQMLPRGRVYRYPPGRGMPDGPMPGVAGGMYSVPYDVGGMPIRDASLSQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQLSSLSLNDSLAS* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2768 654 CDD RRM2_I_PABPs 120 196 IPR045305 -
Mtr4g2768 654 PANTHER POLYADENYLATE-BINDING PROTEIN 23 638 - -
Mtr4g2768 654 Pfam Poly-adenylate binding protein, unique domain 564 628 IPR002004 GO:0003723
Mtr4g2768 654 MobiDBLite consensus disorder prediction 478 499 - -
Mtr4g2768 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 556 633 IPR002004 GO:0003723
Mtr4g2768 654 SUPERFAMILY RNA-binding domain, RBD 311 411 IPR035979 GO:0003676
Mtr4g2768 654 Gene3D - 123 195 IPR012677 -
Mtr4g2768 654 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 35 629 IPR006515 GO:0003723
Mtr4g2768 654 SUPERFAMILY PABC (PABP) domain 497 646 IPR036053 GO:0003723
Mtr4g2768 654 Gene3D - 198 298 IPR012677 -
Mtr4g2768 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 290 IPR000504 GO:0003723
Mtr4g2768 654 SMART rrm2_1 214 286 IPR003954 GO:0003676
Mtr4g2768 654 SMART rrm2_1 317 389 IPR003954 GO:0003676
Mtr4g2768 654 SMART rrm2_1 35 108 IPR003954 GO:0003676
Mtr4g2768 654 SMART rrm2_1 123 195 IPR003954 GO:0003676
Mtr4g2768 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Mtr4g2768 654 PANTHER RNA BINDING PROTEIN 23 638 - -
Mtr4g2768 654 CDD RRM4_I_PABPs 315 393 - -
Mtr4g2768 654 SMART poly_2 568 631 IPR002004 GO:0003723
Mtr4g2768 654 Gene3D - 552 635 - -
Mtr4g2768 654 CDD RRM1_I_PABPs 35 114 - -
Mtr4g2768 654 SMART rrm1_1 35 108 IPR000504 GO:0003723
Mtr4g2768 654 SMART rrm1_1 317 389 IPR000504 GO:0003723
Mtr4g2768 654 SMART rrm1_1 214 286 IPR000504 GO:0003723
Mtr4g2768 654 SMART rrm1_1 123 195 IPR000504 GO:0003723
Mtr4g2768 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 194 IPR000504 GO:0003723
Mtr4g2768 654 SUPERFAMILY RNA-binding domain, RBD 212 295 IPR035979 GO:0003676
Mtr4g2768 654 CDD RRM3_I_PABPs 212 291 - -
Mtr4g2768 654 SUPERFAMILY RNA-binding domain, RBD 34 203 IPR035979 GO:0003676
Mtr4g2768 654 Gene3D - 30 122 IPR012677 -
Mtr4g2768 654 Gene3D - 299 401 IPR012677 -
Mtr4g2768 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Mtr4g2768 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Mtr4g2768 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 283 IPR000504 GO:0003723
Mtr4g2768 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 192 IPR000504 GO:0003723
Mtr4g2768 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 386 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2768 Mtr-Chr4 41376510 41381809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2768 33 652 Eukaryotic Initiation Factors Gene Family AT1G49760 76.032 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2768 K13126 - gmx:100780329 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2768 4 41376510 41381809 Mtr4g2768 4 41376510 41381809 ECH
Mtr3g3660 3 50455870 50464548 Mtr4g2768 4 41376510 41381809 ECH