Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2751 ATGGCTGAAGTTAACGCTAACCCCGAACCCCCTCAAAACATGACCATCTACATCAACAACCTCAACGAAAAAATCAAAATCGATGAGTTGAAGAAATCTTTGCACGCTGTTTTCAGCCAATTTGGGAAGATACTTGAGGTTTTGGCTTTCAAGACTCTGAAACATAAGGGTCAAGCTTGGGTGATTTTTGAGGATGTTACTTCTGCTTCTAATGCTCTTAGGCAAATGCAAGGTTTCCCCTTCTATGATAAGCCCATGAGAATACAGTATGCCAGGACTAAATCTGATGTCATAGCTAAAGCAGAAGGTACTTTTGTTCCTCGGGAAAAACGAAAGAGGCACGATGACAAAGCAGGCAAAAAAAGGAAGGACCAAAACGATGCTAATTTAGCTGGAACTGGCCTAAATCCTGCTTATGCTGGTGCTTACGGTGCAACTCCTGCTTTATCCCAGATACCTTATCCAGGCGGTGCGAAGTCCTTGCTACCTGAGGCTCCTGCACCACCAAATAATATTCTCTTTATTCAGAATCTTCCTAACGAGACCACTCCCATGATGCTTCAAATGTTGTTTCTTCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAGCAAAGCCAGGAATTGCCTTTGTGGAATATGGAGATGAGATGCAATCCACGATGGCTATGCAGGCGCTGCAAGGTTTCAAGATAGCCCCACAAAACCCTATGTTGATAACTTATGCAAAGAAATAG 738 0.4282 MAEVNANPEPPQNMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVIFEDVTSASNALRQMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKAGKKRKDQNDANLAGTGLNPAYAGAYGATPALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQGFKIAPQNPMLITYAKK* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2751 245 Gene3D - 160 245 IPR012677 -
Mtr4g2751 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 245 IPR000504 GO:0003723
Mtr4g2751 245 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 7 245 - -
Mtr4g2751 245 CDD RRM1_U1A_like 15 92 - -
Mtr4g2751 245 MobiDBLite consensus disorder prediction 104 132 - -
Mtr4g2751 245 Gene3D - 7 112 IPR012677 -
Mtr4g2751 245 SUPERFAMILY RNA-binding domain, RBD 10 234 IPR035979 GO:0003676
Mtr4g2751 245 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 7 245 - -
Mtr4g2751 245 CDD RRM2_U1A_like 169 241 - -
Mtr4g2751 245 SMART rrm1_1 172 241 IPR000504 GO:0003723
Mtr4g2751 245 SMART rrm1_1 15 89 IPR000504 GO:0003723
Mtr4g2751 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Mtr4g2751 245 MobiDBLite consensus disorder prediction 104 127 - -
Mtr4g2751 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 232 IPR000504 GO:0003723
Mtr4g2751 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2751 Mtr-Chr4 41146405 41150916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2751 16 96 Eukaryotic Initiation Factors Gene Family AT4G34110 32.530 4.61e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2751 K11091 - gmx:100500002 427.172