Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2747 ATGTCTACAAGTGAGATCACGAAAATGGAAGAAGGTGATCTTAAGACACAAACAAAAGGAGAATCAGGGTTTTGCGGTTCTCCTGAGGTAGTTCAAATCATACAAAAGGTAATAGCAGAGGTGATAGGAACATACTTCTTAATATTTGCAGGGTGTTGCGTAGTTGTTCTGAATAAAGTGGAAGAAACTAAAGGAACAGTAACATTTCCTGGAATTTGTGTAACATGGGGTTTGTCAGTTATGATCTTGGTTTATTCTCTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCAGTCACAGTTAGCTTCGCAATTTATCGTCATTTCCCGCTTAAACAGGTGCCATTATATCTTGCTGCACAAGTGCTAGGATCTGTCCTTGCTAGTGGAACATTGTACCTTCTTTTTGATGTAGATGAAAAATCTTTTTTCGGAACAGTACCAGCAGGATCTAATATTCAATCTCTTGTCTTTGAGATGCTCACATCATTTCTCTTGATGTTTGTTGTATCTGCTGTTTCCACGGACAATAGAGCGATTGGAGAATTGGCAGGGATTGCTGTTGGCATGACAATCGTAGTAGACGTCTTCATTGCTGGTCCTGTGTCAGGTGCATCAATGAACCCAGCCAGAACTTTTGGGCCTGCTGTAGTGATGCACATCTACAAGGGATTCTGGGTTTATATAGTTGGACCCTTTGTTGGTGCCATATTAGGTGCCTCAGCTTACAACTTGATTAGATTCACTGATAAACCACTCAGAGAAATTAGCCGAAGCTCAAGCTTCCTCAAAAGTGTCTCTAGAGCAGCAAGTTTTCGGTAG 822 0.4136 MSTSEITKMEEGDLKTQTKGESGFCGSPEVVQIIQKVIAEVIGTYFLIFAGCCVVVLNKVEETKGTVTFPGICVTWGLSVMILVYSLGHISGAHFNPAVTVSFAIYRHFPLKQVPLYLAAQVLGSVLASGTLYLLFDVDEKSFFGTVPAGSNIQSLVFEMLTSFLLMFVVSAVSTDNRAIGELAGIAVGMTIVVDVFIAGPVSGASMNPARTFGPAVVMHIYKGFWVYIVGPFVGAILGASAYNLIRFTDKPLREISRSSSFLKSVSRAASFR* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2747 273 SUPERFAMILY Aquaporin-like 32 254 IPR023271 -
Mtr4g2747 273 Gene3D Glycerol uptake facilitator protein. 3 257 IPR023271 -
Mtr4g2747 273 CDD MIP 35 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr4g2747 273 Pfam Major intrinsic protein 31 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr4g2747 273 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr4g2747 273 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr4g2747 273 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr4g2747 273 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr4g2747 273 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr4g2747 273 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr4g2747 273 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Mtr4g2747 273 PANTHER AQUAPORIN NIP2-1 8 269 IPR034294 -
Mtr4g2747 273 PANTHER AQUAPORIN NIP4-1 8 269 - -
Mtr4g2747 273 MobiDBLite consensus disorder prediction 1 23 - -
Mtr4g2747 273 TIGRFAM MIP: MIP family channel proteins 39 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2747 Mtr-Chr4 41083871 41085467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2747 5 268 Major Intrinsic Protein MIP AT5G37820 63.019 3.84e-122 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2747 K09874 - gmx:100819179 393.275