Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2743 ATGGCAGTTTTACCTACAAGTTCCTCCAACTTGGAATTGACCATATCTATCCCAGGTTTTGCTTCTTCACCAATATCTTTTCTCCCCTCATCATCTGTGAAAAAGTTGGATGTGAACCGAGTAACCATAGAAGAAGAATGGATGGCACTAGAAGAGGAAGAAGAAAGCAGCGTTAATGGAGATACTCCTCGCAAGAAACTGCGTCTAACAAAGGAACAGTCCCATCTCCTTGAAGAAAGCTTCAGAAAAAACCACACTTTAAACCCAAAGCAGAAAGAGTGTTTGGCAATGCAGCTTAAGCTCCGACCAAGGCAAGTGGAGGTGTGGTTTCAAAACCGTAGGGCCAGGAGCAAGTTGAAGCAGACAGAGATGGAGTGCGAATACCTGAAGAGGTGGTTTGGGTCTTTAACAGAGCAGAACAGGAGGCTACAAAGAGAAGTTGAGGAGCTTAGGGCTATGAAGGTAGGTCCACCTACTGTGTTATCACCTCACAGTTCTGAGCCTCTTCCAGCTTCAACCTTATCAATGTGTCCCCGATGTGAGCGTGTCACCACCAATACCACCGCCGCTGTCGCCGCCGAAAAAATTAGTCATTGA 597 0.4623 MAVLPTSSSNLELTISIPGFASSPISFLPSSSVKKLDVNRVTIEEEWMALEEEEESSVNGDTPRKKLRLTKEQSHLLEESFRKNHTLNPKQKECLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVLSPHSSEPLPASTLSMCPRCERVTTNTTAAVAAEKISH* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2743 198 CDD homeodomain 63 121 IPR001356 GO:0003677
Mtr4g2743 198 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Mtr4g2743 198 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Mtr4g2743 198 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Mtr4g2743 198 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Mtr4g2743 198 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 191 - -
Mtr4g2743 198 PANTHER - 1 191 - -
Mtr4g2743 198 Gene3D - 56 127 - -
Mtr4g2743 198 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Mtr4g2743 198 SMART HOX_1 62 124 IPR001356 GO:0003677
Mtr4g2743 198 Coils Coil 133 153 - -
Mtr4g2743 198 SUPERFAMILY Homeodomain-like 55 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2743 Mtr-Chr4 40990540 40995927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2743 33 191 Homeobox Transcription Factor Family AT1G70920 60.714 4.48e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr4g2743 Homeodomain 3.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2743 K09338 - gmx:100778684 303.138