Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2742 ATGGGTCGTGTTAAACTTGAGATAAAAAGAATAGAGAACACAGTGAATCGACAAGTTACATATTCAAAACGTAGAAATGGTCTCATTAAGAAAGCTTATGAGTTATCAATCCTTTGTGATATTGATATTGCCCTTATAATGTTTTCTCCATCAAATAGACTTAATCATTTTTCAGGTAAAAGAAGGATAGAGGATGTTTTAACTCGTTACATTAATATTCCTGACCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGCTACCCTACCGAAGGGGTATTCAGAGCAAGGAGTATTTGCTCAGGATACTTCAGCAGTTAAGGAATGAAAATGACATATCCCTTCATATGTCCAATCCGGGAGACATTAACTCTGAGGTTGAGGATCTCCAACAAGAAGTTAATAGATTACAACAGCAACTTCAAATGGTAGAGGAACAGATAAGGAAATATGAACCCGACCCATTAAAGATGACATCTATAGCAGAGCTTGAAACTGGTGAAAAAAACGTAGTAGAAACCTTGGCCCGTGTCATGGAGAGAAAGGAACAGTTGTTGAACAACAATCTATCTTCGTATGATCCATCAGCTATTCAGGGGATGCCGACCTCTTTTGAGAATGTTAGTTGGCTGCAAGATGGTGGACAGAACCAACCCCAAATTTTTGATACATCAGCTCCTATGGATCCTCTCAGGGATTTGTCCTCTTCTGTATACGGTTCATTTTCACAAGGGACGAGTTCAAATGTTGTTGATCCAAGAGGTATAGGAGAGTGCCACGTGGGAAATCCAAACGATGGAAACATTCAAGCATGGCCTCAAGGATACACATTATATCCTCAACATGACATTGTAGGAACTGATCATCATCACCACAATATCCAAGATATGATGTTGCATGGGCAAATGAACATGCCAATCACTGCCTCACAAGTTGAACCTCCCAAAAATGATTCAACAGAATATGATCAATGTAACCAACCTAATCACCAGCTTCATGGTCAATGA 1005 0.391 MGRVKLEIKRIENTVNRQVTYSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLNHFSGKRRIEDVLTRYINIPDQERDNAVSFPELPYRRGIQSKEYLLRILQQLRNENDISLHMSNPGDINSEVEDLQQEVNRLQQQLQMVEEQIRKYEPDPLKMTSIAELETGEKNVVETLARVMERKEQLLNNNLSSYDPSAIQGMPTSFENVSWLQDGGQNQPQIFDTSAPMDPLRDLSSSVYGSFSQGTSSNVVDPRGIGECHVGNPNDGNIQAWPQGYTLYPQHDIVGTDHHHHNIQDMMLHGQMNMPITASQVEPPKNDSTEYDQCNQPNHQLHGQ* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2742 334 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr4g2742 334 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr4g2742 334 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr4g2742 334 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr4g2742 334 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr4g2742 334 Coils Coil 126 153 - -
Mtr4g2742 334 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr4g2742 334 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 276 - -
Mtr4g2742 334 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Mtr4g2742 334 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr4g2742 334 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mtr4g2742 334 Pfam K-box region 125 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr4g2742 334 MobiDBLite consensus disorder prediction 308 334 - -
Mtr4g2742 334 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Mtr4g2742 334 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2742 Mtr-Chr4 40982307 40986069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2742 1 308 Type I MADS-box Gene Family AT1G22130 54.062 4.90e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr4g2742 K-box 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2742 - - gmx:100305913 509.22