Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2729 ATGGCAAACATTCTAGGTCTTATCAGACTTCGTATCAAAAAAGGCACTAATCTCATACCTCATGATTCTCGTACAAGTGACCCTTATGTTCTTGTCACCATGGAAGAACAGACACTGAAGACTGCTGTTGTGAATGATAACTGCCATCCTGAATGGAATGAAGAACTGACACTTTATATTAAAGATGTTAACACACCAATACATCTGATAGTTTGCGACAAAGACACTTTCACTGTGGACGACAAAATGGGCGAAGCTGATATAGACATAAAACCATATCTTCAATGTGTGAAGATGGGGTTGAGCGATCTCCCAGATGGACATGTAGTCAAGACTGTTCAACCAGATACGACTAATTGCCTAGCCGAAGAGAGTAGCTGCGTATGGAGAGATGGAAAAGTCGTCCAAGAGATGAGTTTAAGATTGAGAAATGTTGAGTCTGGTGAAGTACTCGTCGAAATTGAGTGGATTGATGTTACAGATTCCGAAGGCAAAGGCTTATCTGAGCTTGAGTTTTAG 519 0.4085 MANILGLIRLRIKKGTNLIPHDSRTSDPYVLVTMEEQTLKTAVVNDNCHPEWNEELTLYIKDVNTPIHLIVCDKDTFTVDDKMGEADIDIKPYLQCVKMGLSDLPDGHVVKTVQPDTTNCLAEESSCVWRDGKVVQEMSLRLRNVESGEVLVEIEWIDVTDSEGKGLSELEF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2729 172 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 170 IPR044562 -
Mtr4g2729 172 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 170 - -
Mtr4g2729 172 Gene3D C2 domain 5 169 IPR035892 -
Mtr4g2729 172 Pfam C2 domain 7 92 IPR000008 -
Mtr4g2729 172 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Mtr4g2729 172 SMART C2_3c 7 102 IPR000008 -
Mtr4g2729 172 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 157 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2729 Mtr-Chr4 40829119 40830376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2729 39 166 C2H2 Transcription Factor Family AT1G70790 56.154 1.40e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2729 - - gmx:100781585 271.937