Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2687 ATGGAGTTCACAGTTGAAGCGGTGGGAAACATAGACAACTGTTTCGTATCTCTCCCCTTACCTCTAATCCAAACTCTTCAATCCATACGAGACTCATCTCTTCTTCCACCAATCCTCGCTCTCGAGCTTCGTTCTCCCTCTCACTCTCCTCTCTCCTGGTTTGTTGCTTGGTCCGGCGCCACTTCTTCTTCCTCTTCAACCATACAAATCTCTCAACAATTCGCTGAATGCATTTCTCTACCAATTCATTCTCCAATTCAAGTTAAAGTCGCTTCTAACGTCCCTCATGCTTCTTCCGTTTCTATTGAGCCGGATACCGAGGATGATTGGGAGATTTTGGAACTTAATTCTCAACAAGCTGAGGATCAAATTCTCAATCAGATTAGGATTGTTCATGAAGGGCTGAGGTTTCCTTTGCGGTTGAATCATCACACTGTCATCACATTTCACGTTGTTTCTGTTTTTCCCAAGAATGCGGTGGTACAACTCATGCCCGGAACTGAAGTTGAGGTTGCTCCAAAGACGCGCAAAAAAAATTCGGATTTAGCTGGAAATTCACATGTAGGTTCCAATAGTAAAGATCATACTGCAAAGATGCTGCTCCGTTTACAAGAACCAAATGAGTTATGTCGTACCAGTACTCATGTCAAAGGTGTTGAGCTTCATGCAGGGCTTACTTCTGTTGCTTTTGTTCATCCAGAAACAGCCAAGCGCTTCTCATTTAACATGCTTCAGTTGGTTTCCATAGTACCAAGAGTATCCAAAGAAAATGTTAGTAAATCCAGAAGAAAATCCAATATTATGAAAGCCAAAGGTGGTTCAGCTGTTAGTGAAGTTGAGAATGGAAACACGGACAAGAAGGAACATCGACAAGCAGTTGTTCATCTGTTGATTTCAGAATCCGTGGCTAAAGGACATGTAATGCTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATGTGATATTATTTTGGAAAAAAGTATTCCTTCTATTTCTCTCTGTCCTTGTCGATTCAAACTGTTAAGGCAAGAGAGTACTGTTGAGAAAGATGGTCTAGATGATTATCACAGCCACAGGAATCACATTGATGAAAACATACATAGAAAAGCTACTTCTGATCTCTTTTTGGATACCATTAATTGGTCGATCCACAGTGAAGTTGTTGCGGCTCTTTCTGATGAATCTAGTTACAGAGAAGAGGAAGTGGTTGCAAACCAATCTCAGAATCATAAGGGATTACAAAGTCTTGTACGACTATGGTATATTGCGCACCTTGAGGCAATTACTTCCATTACGGGGATAGAAGTTAATTCATTGGTTATCAGTAGTAAAACCTTGCTTCATTTTGAATCAAGCTGTTACAAGATTGGGTGCGATGAGAAGCTTCGGCTGACTTCTTCAGAAAACAGTGGCAATGCAGTTGAAATGTTATTTTTATTGACCTTTGGTGAAGGAGATCTGAATTATGGAAAACTTAATGCATATGAAGTTTCTCTTGGAGGAAGACTCAGTAACATCAACGTCGATGATCTGAAGATTTTTGAAAAAATAAAATTGGGTGATCCAGTTTCTATTCATTCTATGGAAGAGAGAGCCTCTGAAGACCACATTAATTCTAATGTATCTTTCCTTGGCTGGATGGAGAAAACTGCTTCTGATGTTATCGATAGGATGTTGGTATTGTTATCTTCAGCATGTGGTTTGTGGTTTGGCTCATGCAACCTGCCACTTCCTGGACATGTTCTGATATATGGACCTTCGGGCTCTGGGAAAACTATACTAGCAATGAATGTGGCAAAATCCCTTGAGAATCGTGCAGACATCTTAGCACACACAATTTTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCCAATTATTCGCCAAGAACTTGCAAACCATATAACTGAAGCTTTAAACCATGCACCTTCTGTTGTCATATTTGATGATCTTGATGGTATAATTTCTACCTCTGATTCCGAAGGATCTCAGCCATCAATGTCTGTTGCTGGACTCACTGACTTTCTGGTCAACATCATGGATGAATATGGGGAGAAGAGACGAAAATCATGTGGATTTGGACCAATAGCCTTCATAGCTACCATACAGTCCCTAGAGAATATACCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATTAAGCTGCCTGCTCCTGCCGCTTCTGAGCGCAAGGCTATGTTGAAGCATATAATACAAAGGCGACACCTGCAATGCAATGATGACATCCTGCTTGATGTGGCTGCAAAATGTGATGGTTATGATGGCTATGATTTGGAAATATTAGTTGACAGAACTGTTCATGCCGCTGTTCGCCGTTTTCTGCCATCTAATGTCATTTATGAGCACGAGGGCCCTGCATTACTACAGGAGGATTTCTCTCAGGCAATGCACGATTTTCTTCCAGTTGCAATGCGCGATATCACAAAATCTGTTTCTGATGATGGCCGTTCTGGATGGGACGATGTCGGTGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATTGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCACAAGCACCATTAAGGTTGCGGTCAAATATCCTTCTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTCGGTGCAGCTGCGGCCGCTTCTTCACTTAGATTCATATCAGTGAAAGGGCCAGAACTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTCTCTAAAGCAGCAGCTGCAGCACCGTGCCTGCTTTTTTTTGATGAATTTGATTCTATTGCTCCCAAGAGAGGGCACGATAATACTGGAGTAACTGATCGTGTTGTTAATCAATTTTTGACTGAGTTAGACGGTGTTGAGATTTTAGCTGGTGTATTTGTGTTCGCTGCAACCAGTAGACCAGATTTACTTGATGCTGCACTCTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGTGACTTTCCATCTTGGCAGGAGAGATTGGAAATTCTTACGGTACTTTCTAGAAAGTTACCAATGGCCAATGATATTGATTTGGCTACAGTAGCTAATATGACTGAGGGGTTCAGTGGAGCTGATCTTCAAGCTCTCCTCTCAGACGCGCAACTTGCAGCAGTTCATGATATCCTTGACAATATTGATACGTCTAGGTCGGAGAGAACACCAGTTATTACTGATGCTCTTCTAAAGCTCACTGCATCCAAGACCAGACCATCTGTTTCAGAGGAAGAGAAAAGACGACTCTACAATGTTTATCGCCAATTCCTGGATTCAAAGAGATCTGTTGCTGCCCAGTCAAGGGATATTAAAGGCAAGAAGGCAACTCTTGCGTGA 3393 0.4162 MEFTVEAVGNIDNCFVSLPLPLIQTLQSIRDSSLLPPILALELRSPSHSPLSWFVAWSGATSSSSSTIQISQQFAECISLPIHSPIQVKVASNVPHASSVSIEPDTEDDWEILELNSQQAEDQILNQIRIVHEGLRFPLRLNHHTVITFHVVSVFPKNAVVQLMPGTEVEVAPKTRKKNSDLAGNSHVGSNSKDHTAKMLLRLQEPNELCRTSTHVKGVELHAGLTSVAFVHPETAKRFSFNMLQLVSIVPRVSKENVSKSRRKSNIMKAKGGSAVSEVENGNTDKKEHRQAVVHLLISESVAKGHVMLAKSLRLYLRASLHSWVYLKACDIILEKSIPSISLCPCRFKLLRQESTVEKDGLDDYHSHRNHIDENIHRKATSDLFLDTINWSIHSEVVAALSDESSYREEEVVANQSQNHKGLQSLVRLWYIAHLEAITSITGIEVNSLVISSKTLLHFESSCYKIGCDEKLRLTSSENSGNAVEMLFLLTFGEGDLNYGKLNAYEVSLGGRLSNINVDDLKIFEKIKLGDPVSIHSMEERASEDHINSNVSFLGWMEKTASDVIDRMLVLLSSACGLWFGSCNLPLPGHVLIYGPSGSGKTILAMNVAKSLENRADILAHTIFVSCSKLALEKVPIIRQELANHITEALNHAPSVVIFDDLDGIISTSDSEGSQPSMSVAGLTDFLVNIMDEYGEKRRKSCGFGPIAFIATIQSLENIPQSLSSSGRFDFHIKLPAPAASERKAMLKHIIQRRHLQCNDDILLDVAAKCDGYDGYDLEILVDRTVHAAVRRFLPSNVIYEHEGPALLQEDFSQAMHDFLPVAMRDITKSVSDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWQERLEILTVLSRKLPMANDIDLATVANMTEGFSGADLQALLSDAQLAAVHDILDNIDTSRSERTPVITDALLKLTASKTRPSVSEEEKRRLYNVYRQFLDSKRSVAAQSRDIKGKKATLA* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2687 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1100 IPR027417 -
Mtr4g2687 1130 PANTHER AAA-FAMILY ATPASE 5 1127 - -
Mtr4g2687 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 816 IPR027417 -
Mtr4g2687 1130 PANTHER - 5 1127 - -
Mtr4g2687 1130 Gene3D - 538 738 IPR027417 -
Mtr4g2687 1130 Gene3D - 1008 1087 - -
Mtr4g2687 1130 Pfam AAA+ lid domain 1029 1068 IPR041569 -
Mtr4g2687 1130 Gene3D - 94 175 - -
Mtr4g2687 1130 ProSitePatterns AAA-protein family signature. 977 995 IPR003960 GO:0005524|GO:0016887
Mtr4g2687 1130 SUPERFAMILY Cdc48 domain 2-like 95 173 IPR029067 -
Mtr4g2687 1130 Pfam Peroxisome biogenesis factor 1, N-terminal 99 173 IPR015342 GO:0005524|GO:0005777|GO:0007031
Mtr4g2687 1130 Gene3D - 739 831 - -
Mtr4g2687 1130 Coils Coil 1129 1130 - -
Mtr4g2687 1130 MobiDBLite consensus disorder prediction 260 286 - -
Mtr4g2687 1130 Gene3D - 838 1100 IPR027417 -
Mtr4g2687 1130 Pfam ATPase family associated with various cellular activities (AAA) 877 1004 IPR003959 GO:0005524|GO:0016887
Mtr4g2687 1130 Pfam ATPase family associated with various cellular activities (AAA) 591 736 IPR003959 GO:0005524|GO:0016887
Mtr4g2687 1130 CDD AAA 585 736 - -
Mtr4g2687 1130 CDD AAA 843 1006 - -
Mtr4g2687 1130 SUPERFAMILY ADC-like 10 82 IPR009010 -
Mtr4g2687 1130 SMART AAA_5 587 739 IPR003593 -
Mtr4g2687 1130 SMART AAA_5 873 1009 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2687 Mtr-Chr4 40429660 40444189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2687 588 794 Calmodulin-binding Proteins AT3G56690 28.846 9.11e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2687 K13338 - gmx:100803882 1815.43