Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2684 ATGCAAACGGGTGGAATTGAACCGCTTACAGGAGAGCCATACTTTCATGTCGTCCTTTCGAAAACACATCTTAGTACCCGTTATGGAATGGGGCCGAGCAGCAGCATATGTGAAGAACTTCCTTCTAAAGAGGTTCCGACTATTCTCAAATATCGGGGTAAGAGTTGGGGCATGACTTATAATGGGCAGAACAAAACCAAACAGTTTGATAGTGTTAGCTGGGAAAAATTTGCTGAAGATAATTATTTGAAGCTTGGAGACGCTTGTGTTTTTGAGCTCATGAAAAACAGCGAAGAGGAAATCGTCTTCAAAGTTCAAATTCTTAGAGGTGAAGAAGAGCCAATTTTGCTGTCCGAATTTCCTGGAACAGGAATGTTTGGACTATACTTGAATTTTGGGGAATGGAATGATGCCATGATCCATTATTTTGGTTTGACTAAAAGGGATGCAATGGAACGAATATTCATTGACCCATTTTGTAGTACCCTGTTGGAATGGAATAGGTATCCTCATTATACTTGA 522 0.4023 MQTGGIEPLTGEPYFHVVLSKTHLSTRYGMGPSSSICEELPSKEVPTILKYRGKSWGMTYNGQNKTKQFDSVSWEKFAEDNYLKLGDACVFELMKNSEEEIVFKVQILRGEEEPILLSEFPGTGMFGLYLNFGEWNDAMIHYFGLTKRDAMERIFIDPFCSTLLEWNRYPHYT* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2684 173 Pfam B3 DNA binding domain 47 105 IPR003340 GO:0003677
Mtr4g2684 173 Gene3D - 7 112 IPR015300 -
Mtr4g2684 173 SMART B3_2 15 111 IPR003340 GO:0003677
Mtr4g2684 173 CDD B3_DNA 13 109 IPR003340 GO:0003677
Mtr4g2684 173 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 118 IPR044837 -
Mtr4g2684 173 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS04G0386900 6 118 - -
Mtr4g2684 173 SUPERFAMILY DNA-binding pseudobarrel domain 12 109 IPR015300 -
Mtr4g2684 173 ProSiteProfiles B3 DNA-binding domain profile. 47 111 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2684 Mtr-Chr4 40412237 40415060 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr4g2684 B3 2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2684 - - mtr:MTR_4g083390 255.758