Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2647 ATGGTTGGAGGTGGAAATGGAGAGTGGCCTTCAGGTGGAGGGTTTAGTCCTGGTCCCATGACTTTGCTTTCCAACTTGTTTGGTGACAACGATGACTGCAAGTCTTTCTCCGAGCTCCTCGCCGGTGACACGTTGGATGTTGAGCATGGAGGTGGAGGAGGAGGAGGAAGAGGTGGTGGTGGCTTGTCACCGTTGGCCATGTTCACTGCTCCACCTCAGCAAACGCTAGCACAAGCCTACTCAAATGCTCAAAACCAATCTGAACATCAATTTTCTGTATCAGTAGTGCCTACCACTACCTCATTGACACAAGTTCCTGCAATAACATTCAACAACATTGCACAACAACTGATACCGAACTCTGTTGAGTATTCTTCTAACTCGGAACAAAGATTACAGAAGTCTTCTTTTGTGAATGTTGACAAGGCTAATGACGACGGCTACAACTGGAGGAAGTATGGACAAAAACAAGTGAAAGGTTGCGAGTTTCCTCGAAGTTATTACAAATGTACACATCCAAGCTGTCTTGTGACGAAAAAAGTTGAACGCGATCCTGTTGATGGTCATGTAACTGCAATTATTTATAAAGGAGAACACATTCATCAACGCCCTCGTCCTAGCAAGCTCACAAATGACAATTCAAGTGTGCAACAAGTTTTATCAGGAACAAGTGACAGTGAGGAAGAAGGAGATCATGAAACTGAAGTAGATTATGAACCTGGTCTCAAGAGAAGAAAAACAGAAGCCAAACTCCTGAATCCAGCCCTTTCCCATAGGACGGTCTCAAAGCCTAAAATCATTGTGCAAACAACAAGTGATGTGGATCTCTTGGAGGATGGATATAGATGGCGCAAATATGGGCAGAAAGTTGTCAAAGGCAACCCATATCCAAGGAGCTATTACAAATGCACAACTCCGGGTTGCAATGTTCGGAAGCATGTTGAGAGGGTTTCAACAGATCCTAAAGCTGTATTGACAACATATGAAGGAAAACATAATCATGATGTGCCAGCAGCCAAGACTAACAGTCATAACCTTGCTAGCAATAATAGTGCATCACAGCTAAAATCACAAAATGCCATACCTGAGATGCAGAATTTCAACAGAAGGGGTCAACATCAGCCTTCAGCAGTGGCACATCTAAGATTGAAGGAAGAGCATATATAA 1167 0.4353 MVGGGNGEWPSGGGFSPGPMTLLSNLFGDNDDCKSFSELLAGDTLDVEHGGGGGGGRGGGGLSPLAMFTAPPQQTLAQAYSNAQNQSEHQFSVSVVPTTTSLTQVPAITFNNIAQQLIPNSVEYSSNSEQRLQKSSFVNVDKANDDGYNWRKYGQKQVKGCEFPRSYYKCTHPSCLVTKKVERDPVDGHVTAIIYKGEHIHQRPRPSKLTNDNSSVQQVLSGTSDSEEEGDHETEVDYEPGLKRRKTEAKLLNPALSHRTVSKPKIIVQTTSDVDLLEDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERVSTDPKAVLTTYEGKHNHDVPAAKTNSHNLASNNSASQLKSQNAIPEMQNFNRRGQHQPSAVAHLRLKEEHI* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2647 388 SMART WRKY_cls 277 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g2647 388 SMART WRKY_cls 144 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g2647 388 SUPERFAMILY WRKY DNA-binding domain 144 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr4g2647 388 ProSiteProfiles WRKY domain profile. 139 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g2647 388 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 216 IPR044810 GO:0003700
Mtr4g2647 388 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 217 388 IPR044810 GO:0003700
Mtr4g2647 388 SUPERFAMILY WRKY DNA-binding domain 269 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr4g2647 388 MobiDBLite consensus disorder prediction 207 224 - -
Mtr4g2647 388 Pfam WRKY DNA -binding domain 145 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g2647 388 Pfam WRKY DNA -binding domain 278 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g2647 388 Gene3D WRKY domain 262 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr4g2647 388 Gene3D WRKY domain 130 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr4g2647 388 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 62 216 - -
Mtr4g2647 388 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 217 388 - -
Mtr4g2647 388 MobiDBLite consensus disorder prediction 201 237 - -
Mtr4g2647 388 ProSiteProfiles WRKY domain profile. 272 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2647 Mtr-Chr4 40064719 40068015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2647 11 40 WRKY Transcription Factor Family AT2G03340 77.419 1.71e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr4g2647 WRKY 1.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2647 - - gmx:100127369 410.223