Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2641 ATGATGAAAAGGAGAAAAGTAAGAGAATATGAAGGAGATGAAAAGAATACTGAAGAAGGAAACACTGAATGGAAACAGATAAGAGAAGAGGCAGCATCAGTAGCAGCTGCTCTACTTAGAGTTCGAAGAGCGAGAAAACGTTACATTGGGGTGAGGCAAAGACCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACCATACAGAACATAAGATTGTGGTTGGGGACCTATGACACTGGTGAAGAGGCTGCTAGAGCTTATGATGAGGCTGCACGTTTGCTTCGCGGTCCAAACACCCGCACAAATTTCTTTCTTTGCCAATCTTCTCATTATGTTCCCACTCTTCCTCCAAAGATTGCCAAAATCCTGCTTCAAAGAATCAAAACCAGAAACACTGCCTCTTATATTCCTGCTAGTGCAGCTCCTTTTCCAATTAACCATTGCGATGAGCAAGAAACCAAAGCAGAACCTGAACCCCACTTTTTTCACCAAATAGAAGAAAACTTTCTAGAAAGTTATGATGGTGCTAGTTATAGTTCTTCTGACATAACTACTTTTCACTGTGGTAGTGGGACTAGTGAAGAAAATTTTAACCAAGAGGGTAGCAGAGAGGATTTCAGATTGGAGTATCATTGTGCTAACAATGTTGATGATGGTGAAAACAACCAGGTTTTTAATGGAGAATTTGAAGACTGCGATGTTGGACTCACTGACTTCCAGTTTCTGGATACTATTGGGTCATTAAGTCACTCTTACTCTTCGCCATTTGAGATAGCAGAGGAGATGGTGGGGCCAATGGTGGACGAGAAATTTAATGTGGATGATTCACTGTTACTTCGAGAAACTTTTAGAATGAAGTATGAACGTAAATTCTCAGCTTGTCTTTACACCTTGATTGGGGTGTCTGAGTGTTTGAGGCTACAAGTTGGACCAGAAAATGGAAATGAATTCTAA 954 0.4109 MMKRRKVREYEGDEKNTEEGNTEWKQIREEAASVAAALLRVRRARKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTGEEAARAYDEAARLLRGPNTRTNFFLCQSSHYVPTLPPKIAKILLQRIKTRNTASYIPASAAPFPINHCDEQETKAEPEPHFFHQIEENFLESYDGASYSSSDITTFHCGSGTSEENFNQEGSREDFRLEYHCANNVDDGENNQVFNGEFEDCDVGLTDFQFLDTIGSLSHSYSSPFEIAEEMVGPMVDEKFNVDDSLLLRETFRMKYERKFSACLYTLIGVSECLRLQVGPENGNEF* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2641 317 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Mtr4g2641 317 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Mtr4g2641 317 MobiDBLite consensus disorder prediction 1 21 - -
Mtr4g2641 317 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Mtr4g2641 317 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Mtr4g2641 317 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Mtr4g2641 317 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Mtr4g2641 317 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Mtr4g2641 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 317 - -
Mtr4g2641 317 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 2 317 - -
Mtr4g2641 317 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2641 Mtr-Chr4 40028542 40029955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2641 45 103 AP2-EREBP Transcription Factor Family AT5G19790 76.271 1.62e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g2641 AP2 5.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2641 K09286 - gmx:100793940 362.459