Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2628 ATGTTACAACAGTTTCAAAACCAAACACACACAAAAACTGAACTAAAAATGGCAACAACAACAACATCTGAAGAAGAAGAGTACATGCAAAACCTCAGATCCAAAGCAACAGAGCTTTTCATCAGAGAAGAATGGACCAATGCTATTGAAACATATTCCCATTTCATTACTCTTTGCACCCACCATCTTTCTGTTCCACACCCCAACCCACTTCACCATCAAAAGCTTCATAAATCACTTTGCATTTCCCTCTGCAACCGGGCCGAAGCAAAATCAAAACTCCGCGAATTCAACTCGGCTTTAGAAGACTGTGATCATGCTCTACAAATTGATGCAACACATTTCAAGAGTCTTGTTTGTAAAGGTAAGATTTTGCTTTGTCTTAATAGATATTCTATGGCTTTGAATTGCTTCAAAACAGCTATGCTTGGGAATCAGGCAAGTGGGAACTGTGAAATGCTTGTTGGGTTTGTTGAAAAATGTAAAAAGTTTGAATTTTTATCGAGGAGTGGAACGATGGATCTTTCTGATTGGGTTTTGAATGGGTTTCCTGGTAAGGCTCCTGAGCTTGCTGAATTTATTGGTGCTGTTGAGATTAGAAAATCTGAGATTAGTGGGCGGGGGGTTTTCACTACTAAGAATGTTGATGCTGGGTCTTTGATTTTGGTTACTAAGGCGGTTGCGATGGAGAGGAGTATTTTGGGAGGTAAAGATTTGAGTGAGGATACTCAGTTAGTTATGTGGAAGAATTTTATTGATAAAGTTGTTGATTTTGTTAAAAAGTGTCACAAGACTAGGAATTTGATTGGTAAATTGTCAATTGGGGAAAATGAGGATGAACTTGATGTCCCTGATGTTGATCTGTTTAGGCCTGAGAATGTTGGTGAGGTGAATTCAAATGAGGATGTTGAGATTGATATGGTTAAGTTGTTGGCTATATTGGATGTTAATTCTCTCACTGAGGATGCAGTTTCAGCTAATGTTTTGAGGAAGAACAACGATTGTTATGGTGTTGGGCTATGGTTGCTTCCGTCATTTGTAAATCACTCGTGTTGTCCTAATGCGAGGCGGTTGCATGTTGGGGATTATTTGATAGTTCATGCTTCAAGAGATTTGAAAGCTGGTGAAGAGATAACTTTTGCTTATCTTGATCCACTTTCTCCCTTGAATAAGAGAAAAGAATTGTCTGTGACATGGGGGATTCTTTGCAAGTGTAAGAGGTGTAAGTTTGAGGGGGAATTCTTGTTATCCAAGCAAGAAGTGAAGGAGATTGAGATTGGTATTGAAAGAGGGATGGATGTAGGTGGTTTGGTGTATAAGCTTGAGGAACAAATGAAGAGATGGAAGGTTAGGGGGAAAGAGAAGGGATACTTGAGGGCTTCATTTTGGTCTTTATATTCAGAGGCTTATGGTTCGGAGAGGTGTATGAAAAGATGGGGAAGGAGAATTCCAGCATTGGATGCAGTGGTTGATAGCATTACAGATGTAGTGGGAGGTGATCATAGGGTGCTTAAGATTCTGATGGAGGAATTGAAGAGAAAAGGCGGTGGCAGTGGTGGTGGAAATTTGGAGATGGAGAAAGTTTTCAAGTTAGCAAGAGAAGTATATGGGAAGGTAGTGAAAAAGCAAGCAATGAGGACACTGCTTGAACTTTGCATTGCTGCTGAATGA 1671 0.3992 MLQQFQNQTHTKTELKMATTTTSEEEEYMQNLRSKATELFIREEWTNAIETYSHFITLCTHHLSVPHPNPLHHQKLHKSLCISLCNRAEAKSKLREFNSALEDCDHALQIDATHFKSLVCKGKILLCLNRYSMALNCFKTAMLGNQASGNCEMLVGFVEKCKKFEFLSRSGTMDLSDWVLNGFPGKAPELAEFIGAVEIRKSEISGRGVFTTKNVDAGSLILVTKAVAMERSILGGKDLSEDTQLVMWKNFIDKVVDFVKKCHKTRNLIGKLSIGENEDELDVPDVDLFRPENVGEVNSNEDVEIDMVKLLAILDVNSLTEDAVSANVLRKNNDCYGVGLWLLPSFVNHSCCPNARRLHVGDYLIVHASRDLKAGEEITFAYLDPLSPLNKRKELSVTWGILCKCKRCKFEGEFLLSKQEVKEIEIGIERGMDVGGLVYKLEEQMKRWKVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKILMEELKRKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLLELCIAAE* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2628 556 Gene3D SET domain 298 412 IPR046341 -
Mtr4g2628 556 Pfam SET domain 206 382 IPR001214 GO:0005515
Mtr4g2628 556 SUPERFAMILY TPR-like 25 143 IPR011990 GO:0005515
Mtr4g2628 556 CDD SET_SMYD 311 408 - -
Mtr4g2628 556 SMART set_7 195 389 IPR001214 GO:0005515
Mtr4g2628 556 MobiDBLite consensus disorder prediction 1 23 - -
Mtr4g2628 556 SMART tpr_5 81 114 IPR019734 GO:0005515
Mtr4g2628 556 SMART tpr_5 115 148 IPR019734 GO:0005515
Mtr4g2628 556 SUPERFAMILY SET domain 196 409 IPR046341 -
Mtr4g2628 556 ProSiteProfiles SET domain profile. 195 383 IPR001214 GO:0005515
Mtr4g2628 556 Gene3D Tetratricopeptide repeat domain 18 154 IPR011990 GO:0005515
Mtr4g2628 556 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 18 544 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr4g2628 SET 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2628 - - mtr:MTR_4g082140 1073.15