LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g2621	ATGTCAGAGGTAAAAGACCCTGCGATAAAGCTCTTTGGCAGGACAATTCCGCTTCTTCCACTGATCATCCCTGCCAACGACTCTTCATTTCCCTCTTCTTCTCCGCCAGAATTCACCTCTGCAATACAACATGAAACTGAGGAACCATCAAGGAAAGAACTAATTACAGCACAAGATGATGAAGCCTCGCAAAAAACTACCGAGGATTTAAGAGCTCTCACAACATCTTCAGTTGTACATGAGAATCCTCCTAAGACTCCATCAGCTGAAACCGAGAATTCTTTATTGAAATCTTCTACAAATGTAGAACAAAGCGAGACTAGTGTTTCTGAAGAAAAAACTTTGAAGAAACCTGACAAAATAATTCCATGCCCGCGATGCAATAGCATGGACACCAAATTTTGTTACTTCAACAATTACAATGTCAACCAGCCTCGTCATTTTTGTAAGAAATGTCAAAGATATTGGACTGCAGGAGGAACAATGAGAAATGTTCCTGTTGGAGCTGGTCGCCGCAAGAACAAGAACTTATCTACCTCGCATTATCGACACTTGATAATTCCAGAGGGAGCTAAACTTAATTCCCCTAATGGAATACATAGTTTGGGAAATGGAGCAGCTGTTTTGACGTTTGATTCAAATCCTCCACTTTGCAACACCATGGCTTCTGTATTGAACATCGCTGAAAGAACTCAAAATTGTGTGTCAAATGGTTTTCATCATGCAAGTTCGTATGGTGGGGAAAATGATCACTCAATTGGAGTTTCGGTTACGGCTTCAAATTCATCAGAGAGAAAAAGCCACACCAGCACAAATGGGTTAGTGGATAAAGGAGTTGAAGGTTTCCCTCCTCAGTTACAACATATTCCAAGTCCCTTTTTGCCTTACACATGGAATTCTGCAATGCCTCCTCCTACCTTTTGTCCACCAAACTATCCATTAGCATTCTATACTCCCGTAACTCCACCTGCATATTGGGGTTGTATGCCACCTCCATGGAATATACCATGCATCTCACCAGGAAGTGCTTCTGTTAATGAAAGTGACTCTGCTCATAGTTCTGTACCGACTTTGGGGAAACACTCAAGGGATGGAAACATCATTACCTCAGTCAACTCACCAAAAGAAAAGCCTGAAACTGAACACAATAGTACCGAAAGCAGCGTTTTGATCCCAAAGACACTTAGATTTGATGACCCAAGTGAAGCTGCAAAGAGTTCATTATGGTCAAAGCTTGGGATCAATAATGACAAGGCCAATTCTCTCAATGGAGGAGGCATGTTCAATGGATTTCAGTCCAAGGGAAAGGACATGAATCACTCGGTTGGAACGTCACCGCTGATGTATGCCAACCCTGCGGCTTTATCGCGGTCTCGTACCTTTCATGAGGAAACCTAG	1398	0.4242	MSEVKDPAIKLFGRTIPLLPLIIPANDSSFPSSSPPEFTSAIQHETEEPSRKELITAQDDEASQKTTEDLRALTTSSVVHENPPKTPSAETENSLLKSSTNVEQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSTSHYRHLIIPEGAKLNSPNGIHSLGNGAAVLTFDSNPPLCNTMASVLNIAERTQNCVSNGFHHASSYGGENDHSIGVSVTASNSSERKSHTSTNGLVDKGVEGFPPQLQHIPSPFLPYTWNSAMPPPTFCPPNYPLAFYTPVTPPAYWGCMPPPWNIPCISPGSASVNESDSAHSSVPTLGKHSRDGNIITSVNSPKEKPETEHNSTESSVLIPKTLRFDDPSEAAKSSLWSKLGINNDKANSLNGGGMFNGFQSKGKDMNHSVGTSPLMYANPAALSRSRTFHEET*	466

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mtr4g2621	465	ProSitePatterns	Zinc finger Dof-type signature.	124	160	IPR003851	GO:0003677\|GO:0006355
Mtr4g2621	465	MobiDBLite	consensus disorder prediction	344	390	-	-
Mtr4g2621	465	MobiDBLite	consensus disorder prediction	344	374	-	-
Mtr4g2621	465	MobiDBLite	consensus disorder prediction	29	43	-	-
Mtr4g2621	465	ProSiteProfiles	Zinc finger Dof-type profile.	122	176	IPR003851	GO:0003677\|GO:0006355
Mtr4g2621	465	PANTHER	DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN	1	465	-	-
Mtr4g2621	465	PANTHER	CYCLIC DOF FACTOR 2	1	465	IPR045174	GO:0003700\|GO:0006355
Mtr4g2621	465	MobiDBLite	consensus disorder prediction	68	108	-	-
Mtr4g2621	465	MobiDBLite	consensus disorder prediction	44	67	-	-
Mtr4g2621	465	MobiDBLite	consensus disorder prediction	29	115	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g2621	Mtr-Chr4	39725931	39729380	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g2621	1	464	C2C2-Dof Transcription Factor Family	AT3G47500	40.695	2.52e-86	270

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-Dof	Mtr4g2621		zf-Dof	9.2e-32	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g2621	-		-	gmx:100813315	555.058

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