Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2620 ATGGATCAGCAAAACCAAAGCATGCGTTTGGTTCTTTCTACTGATGCTAAGCCTAGGTTGAAATGGACTCATGAACTTCACCAAAGATTCACTGATGCAATTAATCAACTTGGAGGTGCAGAAAAAGCAACACCAAAGAGTTTGATGAGGGTGATGGGGATTCCAGGACTCACTTTGTACCATCTTAAAAGTCATTTACAGAAATATAGACTTGGCAAAAGCCAACTGGTAGAAACCTGTTCTGACAACAAACAAGATTACATAGAAATCCAAAACAGTGATGGTCAATGCAGTAGAGAAATCAGTGTTGGAAACCAGAACCAAACTACTGAAAGCTTGAAGATTGCTGAGGCTCTTGAAGTACAAATGGAAGTACAAAAGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTACAGTTTAGAATTGAAGCTCAAGGAAAGTACTTACAATCAGTACTAATGAAGGCACAGGAAGCACTTGCAGGATATAGTTCTTCTTCTTCGACAACGGGTGTAGAACATGCTAAAGCTGAACTTTCTCAGTTATTATCAATAATCAACAATGCATGTCCTAGTTCTCCACTTTCAGAACTGACAGAAACAAGAGGTTTTAGTTTAAACTTCGGTGAGAGGAAACAAAATAGAGGAACTATGTGTTCTTTAGAAAGTTCTCTTACATCGTCTGAAAGCTCCGAGAGAAAAGAGGAAAAACAAACCATAAATGAGGCTGAGAACACTCCAAATTATAATAGTATTTCAGTTGAATTGCCACTAATGGCCATTGAGTCAGAAGGAAGAACATTCAGGACTAATGCAAATGATGGAGGCAGTGGGAGAAAGAGAAGTGCAACTATTGATTTGGATGGTAGATGTGTTGATCAACCAGATGGAAAAATATGTGGCAAAAAACCAAGGAAATCGGAGTTTTCACAAATGCTTGACTTGAACAGCAAGTATGAGAGAGACATTGACTCAAGTTCATTAGAAATAGATTTAAATTGCAGTTCAAGCTTTTAG 1020 0.3765 MDQQNQSMRLVLSTDAKPRLKWTHELHQRFTDAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQLVETCSDNKQDYIEIQNSDGQCSREISVGNQNQTTESLKIAEALEVQMEVQKKLYEQIEVQKHLQFRIEAQGKYLQSVLMKAQEALAGYSSSSSTTGVEHAKAELSQLLSIINNACPSSPLSELTETRGFSLNFGERKQNRGTMCSLESSLTSSESSERKEEKQTINEAENTPNYNSISVELPLMAIESEGRTFRTNANDGGSGRKRSATIDLDGRCVDQPDGKICGKKPRKSEFSQMLDLNSKYERDIDSSSLEIDLNCSSSF* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2620 339 Pfam Myb-like DNA-binding domain 19 70 IPR001005 -
Mtr4g2620 339 Gene3D - 16 74 - -
Mtr4g2620 339 Coils Coil 116 136 - -
Mtr4g2620 339 MobiDBLite consensus disorder prediction 216 252 - -
Mtr4g2620 339 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
Mtr4g2620 339 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
Mtr4g2620 339 Pfam MYB-CC type transfactor, LHEQLE motif 114 159 IPR025756 -
Mtr4g2620 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 339 IPR044848 GO:0003700
Mtr4g2620 339 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2620 Mtr-Chr4 39703934 39705828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2620 1 296 G2-like Transcription Factor Family AT1G69580 49.673 6.24e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr4g2620 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2620 - - gmx:100805252 446.047