Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2606 ATGAGGGCTGCAGCGGTAGCGGCGCCCCGCGGTTTCTGCCGGTTCTTCTGCACGAAGCCAACCGCGTCTTCTCCCACTGTCCCCCTTTCTTCTGGAGTTACTTCCGCTCTAAAGACGGCGGAGCCCAACGAAATTGTCTTCGTCACTGGTCTTAACAAGCGTACTACATCCGAGACTCTGAGGGAAGCATTTAAAAAGTTTGGTGAAGTTAAACAGGTAAGGGTGGTGGCAGATCGTGTCTCAGGTTACTCCAAGGGATTTGGTTACGTGAGATATGCTACTTCAGAGGATGCTGCTAAGGGCATTCAAGGCATGGATGGCAAGTTTTTAGAAGGCTGGATTGTATTTGCAGAGTATGCAAGACCAAGAATCAATGCTATAGCCTCCCAGACTCATACTGAACCATCCAACTCCAAACCTGACGAAAAGAGAACGACACCAGAGAAGAATGGTGAAATGAAGAAGGAAACTGCTGGTGAGAAGAAGAACAAGAAAAAGAAGATAACTGCAAAGGTAGTTGCAGACCAACCAATGGACAAAGATAAGGATAAGAAGTAA 558 0.4713 MRAAAVAAPRGFCRFFCTKPTASSPTVPLSSGVTSALKTAEPNEIVFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGMDGKFLEGWIVFAEYARPRINAIASQTHTEPSNSKPDEKRTTPEKNGEMKKETAGEKKNKKKKITAKVVADQPMDKDKDKK* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2606 185 MobiDBLite consensus disorder prediction 136 185 - -
Mtr4g2606 185 SMART rrm1_1 45 118 IPR000504 GO:0003723
Mtr4g2606 185 SUPERFAMILY RNA-binding domain, RBD 41 126 IPR035979 GO:0003676
Mtr4g2606 185 MobiDBLite consensus disorder prediction 128 185 - -
Mtr4g2606 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 112 IPR000504 GO:0003723
Mtr4g2606 185 Gene3D - 21 129 IPR012677 -
Mtr4g2606 185 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 2 138 - -
Mtr4g2606 185 PANTHER TRANSFORMER-2-RELATED 2 138 - -
Mtr4g2606 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2606 Mtr-Chr4 39578020 39580556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2606 31 123 Eukaryotic Initiation Factors Gene Family AT3G11400 35.484 2.96e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2606 - - mtr:MTR_4g081510 345.125