Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2601 ATGTATAAGGAGAAAACCAAAAAGGGTAATATGCCAACAGTGTGGTTTTCTTTGAAGAAGTCACTACATTGCAAATCAGAACCATCAGATGTACATGATCCAAAAACAAGAAAGCATTTAAGCACAATCTTAACAAAAAAAGGAGGAGGAGGAAGATCAGGTTGTTCAAGGTCAATAGCAAATCTAAAAGATGTTATCCATGGAAGCAAAAGACATATAGAAAAGCCACCAAGTTGCAGTCCAAGATCTATAGGAAGCAGTGAGTTTCTTAATCCAATAACTCATGAAGTTATTTTGAGTAACTCAAGGTGTGAGTTAAAAATCACTGGTTTTCAAGAAGGGATTAACGGTGGTGGTAATAATGCTAGTGGTGGTAGTAGTAGTGGTGGTTCTTCAACTTATGTTGGTACTTTAAGACCTGGTACACCTGGTCCTGGAGGACACCCTACAATGCATTACTTTAACCCTTCTTTTAGAACTTCTTCAACTCCTCCAAGGAAATCTCCTTTTCTTTTGTCAGAAGGGTCTAATGGTTTTCATGGTGGTGGTGGTGTTCATTCAAGTAATAGGATGTCTCTTGAGACAGATTCTAATGGTTCTTCAACTGTTACTTGTCACAAATGTGGTGAACAGTTTAACAAATGGGAAGCTGCTGAAGCTCACCATCTCTCCAAGCATGCTGTTACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAAATTATATGCAGGACAAGCTGGTTAAAGTCAGAAAACCACTGTGGCAGAATAGAGAGAGTTTTAAAGGTCCACAACATGCAAAAAACTTTAGCTAGATTTGAAGAGTATAGAGAGATGGTGAAAATTAAAGCAAGCAAACTCCAGAAGAAACATCCTAGGTGTCTAGCTGATGGAAATGAACTTTTAAGGTTCTATGGAACCACAGTTGCTTGTTCTCTTGGTCTCAATGGCTCTTCAAGTCTTTGTTTATCAGAAAAATGTTGTGTTTGTAGAATCATTAGGAGTGGTTTTTCTGCTAAGAAGGAATTGAAAGGTGGCATAGGTGTTTTCACAACATCTACAAGTGGAAGAGCTTTTGAATCTATAGAGATTTTTGATAATGAACCTTCACTTAGAAAGGCATTGATAGTATGCAGGGTAATTGCTGGTAGGGTTCATAGGCCACTTGAAAACATTCAAGAAATGGCATCTCAAACTGGATTTGATTCATTGGCTGGTAAAGTAGGTCTTTATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGTTTTGTGGTAATTTGCAAATCATGA 1314 0.3782 MYKEKTKKGNMPTVWFSLKKSLHCKSEPSDVHDPKTRKHLSTILTKKGGGGRSGCSRSIANLKDVIHGSKRHIEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFQEGINGGGNNASGGSSSGGSSTYVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSEGSNGFHGGGGVHSSNRMSLETDSNGSSTVTCHKCGEQFNKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENHCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSEKCCVCRIIRSGFSAKKELKGGIGVFTTSTSGRAFESIEIFDNEPSLRKALIVCRVIAGRVHRPLENIQEMASQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKS* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2601 437 MobiDBLite consensus disorder prediction 116 138 - -
Mtr4g2601 437 PANTHER - 12 437 - -
Mtr4g2601 437 SUPERFAMILY ADP-ribosylation 228 436 - -
Mtr4g2601 437 ProSitePatterns Zinc finger C2H2 type domain signature. 205 226 IPR013087 -
Mtr4g2601 437 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 12 437 - -
Mtr4g2601 437 MobiDBLite consensus disorder prediction 116 150 - -
Mtr4g2601 437 Gene3D - 218 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2601 Mtr-Chr4 39529621 39532074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2601 11 436 C2H2 Transcription Factor Family AT5G54630 69.481 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g2601 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2601 - - gmx:100787790 736.102