Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2585 ATGGATTCTCAAATCAAGAATGCTGTTGTTGTCAAGGTAATAGGTCGTACTGGTTCTAGAGGACAGGTGACTCAAGTTAGGGTCAAGTTTAATGATGATTCGAACCGTCACATCATGAGGAACGTGAAGGGACCAGTTAGAGAAGGAGACACCCTCACCCTGCTTGAGTCTGAAAGAGAAGCAAGAAGGTTGCGCTAG 198 0.4545 MDSQIKNAVVVKVIGRTGSRGQVTQVRVKFNDDSNRHIMRNVKGPVREGDTLTLLESEREARRLR* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2585 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mtr4g2585 65 Gene3D - 1 65 IPR012340 -
Mtr4g2585 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 - -
Mtr4g2585 65 CDD S1_S28E 8 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mtr4g2585 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mtr4g2585 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Mtr4g2585 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Mtr4g2585 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2585 Mtr-Chr4 39388737 39389996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2585 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.231 2.01e-35 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2585 K02979 - mtr:MTR_4g081180 103.99