Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2573 ATGCAGATCTTTGTGAAAACATTGACAGGAAAAACCATCACTCTTGAGGTAGAGAGTTCCGATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCTCCTGATCAGCAGAGGCTTATCTTTGCAGGTAAACAGCTCGAGGATGGAAGAATCCTAGCTGATTATAACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAGATATTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTTGAGAGTTCAGATACTATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAGGGTATCCCTCCCGATCAACAAAGGCTTATCTTCGCCGGTAAGCAATTGGAAGACGGGCGCACACTTGGCGATTACAACATTCAAAAGGAGTCCACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAAATATTTGTGAATACTTTGACAGGAAAGACAATAACATTGGATGTAGAGAGTTCAGATACAATAGCTGATGTGAAACTCACTCTCGAGGAGAAAGTAGGTATTCCACTTGACCAAGTGAGGGTTGTGATTGCTGGAAAGCAGCTTAAAGATAGTTATACTCTAGCTCATTATAATATCCAGAAGGAATCTACTCTGCATATGGTTTTGCAGGTTTTTGGCGGTGGTGCCTTCTGA 696 0.4138 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRILADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLGDYNIQKESTLHLVLRLRGGMQIFVNTLTGKTITLDVESSDTIADVKLTLEEKVGIPLDQVRVVIAGKQLKDSYTLAHYNIQKESTLHMVLQVFGGGAF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2573 231 SUPERFAMILY Ubiquitin-like 152 229 IPR029071 -
Mtr4g2573 231 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Mtr4g2573 231 Pfam Ubiquitin family 155 224 IPR000626 GO:0005515
Mtr4g2573 231 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Mtr4g2573 231 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Mtr4g2573 231 CDD Ubl_ubiquitin 77 152 - -
Mtr4g2573 231 Gene3D - 77 152 - -
Mtr4g2573 231 Gene3D - 1 76 - -
Mtr4g2573 231 Gene3D - 153 230 - -
Mtr4g2573 231 CDD Ubl_ubiquitin 1 76 - -
Mtr4g2573 231 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Mtr4g2573 231 PANTHER - 1 156 - -
Mtr4g2573 231 PANTHER - 68 228 - -
Mtr4g2573 231 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Mtr4g2573 231 SMART ubq_7 153 224 IPR000626 GO:0005515
Mtr4g2573 231 SMART ubq_7 1 72 IPR000626 GO:0005515
Mtr4g2573 231 SMART ubq_7 77 148 IPR000626 GO:0005515
Mtr4g2573 231 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Mtr4g2573 231 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Mtr4g2573 231 PANTHER UBIQUITIN 68 228 - -
Mtr4g2573 231 PANTHER UBIQUITIN 1 156 - -
Mtr4g2573 231 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Mtr4g2573 231 PRINTS Ubiquitin signature 87 107 IPR019956 -
Mtr4g2573 231 PRINTS Ubiquitin signature 108 128 IPR019956 -
Mtr4g2573 231 PRINTS Ubiquitin signature 129 150 IPR019956 -
Mtr4g2573 231 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2573 Mtr-Chr4 39263584 39265645 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2573 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 9.07e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2573 - K08770 vvi:100252768 396.356