Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2559 ATGAGCCGAAACATGAACAATTTTACGCCTTTGCCAGGGCTTCGGAGAACAGATTCTAGAGCCTATGGTGCTCCTCATCACACTTCCAATAATCCTCATGAATTCAATGAAGTACCTGTGTTTTACAGATCTCATCATTCTTCTAGGGCCAATGATGAGAGGAGTTCAGGTGCTCAAGATCCTCTCCAATTGTGGGAAATCAGAAGAACTCCTGCAGAACATCACAGGATACCATATTTTCCATTACAACCACATAGAAGACAACAAACTTATAATCACAATGAGGACATGAGAAGAAGGGGCTACAACCCCACAAGAATCAGAGAGATTTTCCAGCATTCACCTTCAAGGTCAACATCAACACAGCAAACAAACACTCGAGTTCCACAATCGGTAGAAAATTCCAAATCGACTTTATTAAGCAAGTTAAGGAAAGTAGTGTACGACCCTACACCAAAGCGTTTAGCTAGAAAAGTGAGCTTATATTATAGAGGCAATGCTGCAAATGATTTGAAAGAGAGTGTTAAAGAAAAGACGGAAGATGGTATGAGATGTGCTATTTGCTTGGAGGATTTTGAGGCCAAAGAAGAGGTGATGCTTACTCCATGCAACCACATGTTTCATGAGGATTGTATAGTAACTTGGTTAACAAGTAAAGGTCAGTGTCCGGTTTGTAGGTTTGTGATTTTTGAAGGAGCAAAGGAAAAAACATCTCCCTTTAACAGGAATGACATTACCAATTTGGAACCCGATGGCGTGATCTCTGCAGAGCTTTTGTCAGTTTTGAGGGCCATGGAAGAAGCTTTTCATTTAGAGAGTGTGAATTACTGA 831 0.4067 MSRNMNNFTPLPGLRRTDSRAYGAPHHTSNNPHEFNEVPVFYRSHHSSRANDERSSGAQDPLQLWEIRRTPAEHHRIPYFPLQPHRRQQTYNHNEDMRRRGYNPTRIREIFQHSPSRSTSTQQTNTRVPQSVENSKSTLLSKLRKVVYDPTPKRLARKVSLYYRGNAANDLKESVKEKTEDGMRCAICLEDFEAKEEVMLTPCNHMFHEDCIVTWLTSKGQCPVCRFVIFEGAKEKTSPFNRNDITNLEPDGVISAELLSVLRAMEEAFHLESVNY* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2559 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 243 IPR013083 -
Mtr4g2559 276 MobiDBLite consensus disorder prediction 76 136 - -
Mtr4g2559 276 MobiDBLite consensus disorder prediction 1 37 - -
Mtr4g2559 276 MobiDBLite consensus disorder prediction 109 136 - -
Mtr4g2559 276 Pfam Ring finger domain 184 226 IPR001841 -
Mtr4g2559 276 MobiDBLite consensus disorder prediction 89 106 - -
Mtr4g2559 276 SMART ring_2 185 225 IPR001841 -
Mtr4g2559 276 SMART ringv_2 184 226 IPR011016 GO:0008270
Mtr4g2559 276 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 276 - -
Mtr4g2559 276 SUPERFAMILY RING/U-box 176 231 - -
Mtr4g2559 276 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Mtr4g2559 276 CDD RING-H2_PA-TM-RING 185 226 - -
Mtr4g2559 276 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 2 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2559 Mtr-Chr4 39156796 39158603 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2559 134 269 C3H Transcription Factor Family AT3G58720 50.000 1.63e-39 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2559 - K19041 gmx:100819139 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2559 4 39156796 39158603 Mtr4g2559 4 39156796 39158603 ECH