Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2552 ATGATGATCAAGTATGACGTTTTTGTGAGCTTTAGAGGCCAAGACACACACAACAATTTTGCCGATCATCTTTTTGCTGCCCTTCAAAGAAAAGGCATCGTTGCATTCAGGGATGATTCTAACCTGAAGAAAGGTGAATCCATAGCACCCGAGCTCCTTCATGCAATTGAAGCCTCAAAGGTTTTTATTGTACTCTTCTCAAAAAACTATGCTTCCTCAACATGGTGCTTGCGAGAGTTGGAATACATCCTTCACTGCAGTCAAGTTTCTGGAACTCGTGTTCTCCCTATTTTCTATGATGTTGATCCTTCTGAGGTGAGACATCAAAATGGAAGTTATGGAGAAGCCCTTGCCAAACACGAAGAAAGATTCCAACATGAATCAGAGATGGTACAAAGATGGAGGGCAAGTCTAACACAAGTCGCCAATCTCTCTGGTTGGGATATGCATCATAAGCCTCAATATGCAGAGATTGAAAAGATTGTTGAAGAGATAACGAATATATCGGGTCACAAATTTTCATGTCTTCCAAAAGAATTAGTTGGAATAAATTATCCTATAGAAAAAGTAGCAAATCTATTACTTTTGGACTCCGTTGATGATGTTCGGGTTGTAGGAATTTGTGGGATGGGTGGAATAGGGAAGACAACTCTTACTACTGCTTTATGTGGTAGAATCTCTCATCGATTTGATGTACGTTGTTTTATTGATGATCTAAGCAGAATATATAGACATGATGGTCCAATTGGTGCACAAAAGCAAATCCTACACCAAACTCTTGGCGGGGAACACTTTCAAATATACAATCTATATGACACAACTAATTTGATACAAAGTAGGCTACGCCGCCTACGAGCACTTATAATAGTTGATAATGTTGATAAAGTTGAACAACTTGATAAATTAGCTGTGAATCGTGAATGCTTAGGTGCAGGGAGTAGAATCGTTATAATTTCTAGAGATGAACATATCTTGAAAGAGTATGGAGTTGATGTAGTTTACAAAGTTCCACTCTTGAATGGGACTAACTCTCTTCAATTGTTTTGTCAAAAAGCTTTCAAACTTGATCATATTATGAGTAGTTTTGATAAGTTGACATTTGACATACTCAGTTATGCTAATGGTCTACCGCTAGCAATTAAAGTATTGGGATCATTTTTGTTTGGTCGAGACATCTATGAATGGAAAAGTGCATTGGCTAGATTGAGCAAAAGTCCAAACAAAGATATCATGGATGTGATGCGATTAAGTTTTGAAGGGTTAGAAAAATTGGAAAAAGAAATATTTCTTGACATTGCTTGTTTTTTCATTCAGAGCAAGAAGATTTATGTCCAAAAAGTTCTAAATTGCTGTGGATTCCATGCTGATATTGGATTAAGAGTTCTAATTGATAAATCACTTCTAAGCATTTCAGAGGAAAATAATATTGAAATGCATAGTTTGTTAAAAGAATTGGGCAGAGAAATTGTCCAAGAAAAGTCAATCAAAGATTCAAGAAGGTGGAGTAGGGTGTGGCTCCATGAACAACTCCACAATATTATGTTAGAGAATGTGGAAATGAAGGTTGAAGCCATATATTTTCCCTGTGATATAGACGAAAACGAAACAGAAATATTAATCATGGGTGAAGCATTGTCCAAAATGAGTCATCTTAGATTGCTCATACTCAAGGAAGTGAAGTTCGCAGGGAACCTCGGCTGCCTTTCTAACGAGTTAAGATACGTAGAGTGGGGTAGATATCCTTTCAAGTATTTGCCAGCATGTTTTCAGCCCAATCAACTTGTTGAATTGATCATGAGGCATAGCAGCGTCAAACAACTATGGAAAGACAAGAAGTATTTGCCCAATTTGAAAATTTTGGATCTAAGCCACTCAAAGAATCTAAGAAAGGTGCCAGATTTTGGAGAGATGCCAAATCTAGAAGAGCTAAATCTCAAAGGCTGTATAAAGCTTGTGCAGATTGATCCATCAATTGGGGTTCTAAGAAAGCTTGTTTTCATGAAATTGAAAGATTGCAAAAATCTAGTAAGCATACCGAACAACATACTTGGTCTCAGCTCTCTTAAATATCTAAATCTTTCCGGGTGTTCCAAAGTGTTTAACAATCCAAGGCATTTGAAGAAATTTGATTCGAGTGATATTTTATTTCATTCCCAATCAACAACTTCCTCCTTGAAATGGACCACAATTGGTTTGCATTCCTTGTATCATGAAGTTTTAACTAGTTGTTTGCTACCTTCTTTTCTTAGCATATACTGTTTGAGTGAAGTTGATATCAGTTTCTGTGGTCTAAGCTATCTCCCTGATGCAATTGGATGTCTACTTCGACTAGAAAGATTAAATATAGGGGGGAACAATTTTGTGACACTGCCTAGCCTGAGGGAGCTTTCCAAACTTGTATATTTAAACTTGGAGCATTGCAAGCTTTTGGAATCTTTGCCTCAACTTCCTTTTCCTACTGCTTTCGAGCATATGACAACATATAAGAGGACAGTAGGATTGGTCATTTTCAACTGTCCTAAATTGGGTGAGAGTGAAGATTGCAATAGCATGGCATTTTCATGGATGATACAATTGATTCAGGCAAGACAACAACCCTCCACTTTCTCCTATGAAGACATCATTAAAATTGTTATTCCTGGAAGTGAAATACCAATTTGGTTCAACAATCAGAGCGAGGGTGATTCAATAAGAATGGACCTATCTCAGATTATGGACAACAATGACAATGATTTCATTGGCATTGCTTGTTGTGCAGTATTCTCCGTTGCACCTGTTGATCCAACTACGACAACATGTGCACGGAGACCCAAAATAGAGCTAAGATTTTCTAATAGTAATAGTCACTTGTTTTCATTTATCATCATTCCAGTCATTCTTGAAAGAGATCATATCGTGGTCAAATCAAATCACATGTGCTTAATGTATTTCCCTCAGAAATCATTATTTGATATTCTGAAGTGGATAGACGGAACTCTCACACATCTTGATGATATCAATATGAAAGCTAGCATTATGAAGGGCCAAGGTCTGGATTTGGAGGTGCAGAATTGCGGGTATCATTGGGTTTATAAACCGGATCTACAAGAGTTAACAATGATGCATCCCGGAAATTCTGTAGCTCGGAAGCGCAAGTTTTTGGCAATTGAAGATGAGGCACAACCATAA 3168 0.3737 MMIKYDVFVSFRGQDTHNNFADHLFAALQRKGIVAFRDDSNLKKGESIAPELLHAIEASKVFIVLFSKNYASSTWCLRELEYILHCSQVSGTRVLPIFYDVDPSEVRHQNGSYGEALAKHEERFQHESEMVQRWRASLTQVANLSGWDMHHKPQYAEIEKIVEEITNISGHKFSCLPKELVGINYPIEKVANLLLLDSVDDVRVVGICGMGGIGKTTLTTALCGRISHRFDVRCFIDDLSRIYRHDGPIGAQKQILHQTLGGEHFQIYNLYDTTNLIQSRLRRLRALIIVDNVDKVEQLDKLAVNRECLGAGSRIVIISRDEHILKEYGVDVVYKVPLLNGTNSLQLFCQKAFKLDHIMSSFDKLTFDILSYANGLPLAIKVLGSFLFGRDIYEWKSALARLSKSPNKDIMDVMRLSFEGLEKLEKEIFLDIACFFIQSKKIYVQKVLNCCGFHADIGLRVLIDKSLLSISEENNIEMHSLLKELGREIVQEKSIKDSRRWSRVWLHEQLHNIMLENVEMKVEAIYFPCDIDENETEILIMGEALSKMSHLRLLILKEVKFAGNLGCLSNELRYVEWGRYPFKYLPACFQPNQLVELIMRHSSVKQLWKDKKYLPNLKILDLSHSKNLRKVPDFGEMPNLEELNLKGCIKLVQIDPSIGVLRKLVFMKLKDCKNLVSIPNNILGLSSLKYLNLSGCSKVFNNPRHLKKFDSSDILFHSQSTTSSLKWTTIGLHSLYHEVLTSCLLPSFLSIYCLSEVDISFCGLSYLPDAIGCLLRLERLNIGGNNFVTLPSLRELSKLVYLNLEHCKLLESLPQLPFPTAFEHMTTYKRTVGLVIFNCPKLGESEDCNSMAFSWMIQLIQARQQPSTFSYEDIIKIVIPGSEIPIWFNNQSEGDSIRMDLSQIMDNNDNDFIGIACCAVFSVAPVDPTTTTCARRPKIELRFSNSNSHLFSFIIIPVILERDHIVVKSNHMCLMYFPQKSLFDILKWIDGTLTHLDDINMKASIMKGQGLDLEVQNCGYHWVYKPDLQELTMMHPGNSVARKRKFLAIEDEAQP* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2552 1055 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 4 926 - -
Mtr4g2552 1055 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 147 IPR035897 -
Mtr4g2552 1055 PRINTS Disease resistance protein signature 204 219 - -
Mtr4g2552 1055 PRINTS Disease resistance protein signature 280 294 - -
Mtr4g2552 1055 PRINTS Disease resistance protein signature 373 387 - -
Mtr4g2552 1055 PRINTS Disease resistance protein signature 612 628 - -
Mtr4g2552 1055 Gene3D - 2 169 IPR035897 -
Mtr4g2552 1055 Pfam C-JID domain 879 1028 IPR045344 -
Mtr4g2552 1055 ProSiteProfiles Leucine-rich repeat profile. 776 797 IPR001611 GO:0005515
Mtr4g2552 1055 SUPERFAMILY L domain-like 539 847 - -
Mtr4g2552 1055 Gene3D - 339 422 IPR042197 -
Mtr4g2552 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 432 IPR027417 -
Mtr4g2552 1055 SUPERFAMILY "Winged helix" DNA-binding domain 409 511 IPR036390 -
Mtr4g2552 1055 SMART till_3 4 144 IPR000157 GO:0007165
Mtr4g2552 1055 Pfam TIR domain 4 167 IPR000157 GO:0007165
Mtr4g2552 1055 Gene3D - 170 333 IPR027417 -
Mtr4g2552 1055 Gene3D Ribonuclease Inhibitor 728 856 IPR032675 -
Mtr4g2552 1055 Gene3D Ribonuclease Inhibitor 491 727 IPR032675 -
Mtr4g2552 1055 Pfam NB-ARC domain 185 408 IPR002182 GO:0043531
Mtr4g2552 1055 Pfam Leucine Rich repeats (2 copies) 615 656 IPR025875 -
Mtr4g2552 1055 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 926 IPR044974 GO:0006952
Mtr4g2552 1055 ProSiteProfiles TIR domain profile. 3 169 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2552 Mtr-Chr4 39112637 39119839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2552 5 703 WRKY Transcription Factor Family AT4G12020 30.737 9.56e-80 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2552 - - mtr:MTR_4g080070 1300.42