Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2549 ATGATGTCCAGATCGTATACAAACCTTTTAGATTTGGCTTCTGGGAATTTCCCAGCAATGGGATCAGGATCGGGGAGGGAGTTTAAAGAACGAAGGCGGATGCCGAGGGTTATGAGTGTCCCGGGGATTGTCTCAGAGGTGGATGATGATCAGGCAGTAAGTGTTTCTTCGGATAATCCGTCAACTATTACTACTGATCGAATCATCATTGTAGCAAATCAGCTACCTTTGAAAGCTAATAAAAGAGAGGACAACAAAGGGTGGAATTTTAGTTGGAATGAGGATTCTTTGCTATTACAGCTTAAGGATGGATTTCCAGAAGAGATGGAAGTTTTGTATGTTGGGTCTTTGCGCGTTGACATTGATCCTGCTGAACAAGATGATGTATCGCAGTATTTGCTGGAGAAGTTCAAATGCGTCCCCACTTTTCTGCCTCCTGATGTTTTGGCAAACTTTTACGACGGCTTCTGCAAAAGGCAGTTATGGCCACTTTTTCATTACAAGTTACCGTTTTCAACTGATAAAAGCCACCGCTTTGATCGCCATTTGTGGGAAGCCTATGTTCTGGCAAACAAGCTGTTCTTTCAGAAGGTAGTAGAAATAATAAACCCGGAGGATGATTATATTTGGGTTCATGATTACCATTTGATGGTGCTGCCAACTTTTCTAAGAAGGCGTTTTAACAGGGTTAAAATGGGATTTTTCTTGCATAGCCCCTTTCCATCATCGGAGATATATAGGACTCTTCCTGTCAGGGAGGAGATACTTAAAGCTTTACTAAATTCTGATATCATTGGATTCCATACTTTCGATTATGCTCGTCATTTTCTTTCCTGCTGCAGTCGTATGTTGGGTCTAGAGTATCAGTCAAAGAGGGGTTATCTAGGATTGGAATATTACGGGAGGACTATCAGTATTAAGATCATGCCTGTTGGGATTCACATGGGTCGGATTGAATCTGTTATGAGGATGTCGGATGAGGAGTGTAAAGCAAGGGAGCTCAAACAGCAATTTGAAGGAAAAACCATTTTGCTTGGTATTGACGATATGGACATTTTTAAAGGTATAAATTTGAAGATTCTGGCTATGGAGCAGATGCTGAAACAACACCCCAAATGGCAAGGAAGAGCTGTTTTAGTCCAGATAGTTAACCCTGCTAGAGGTAAAGGGATACACGTAGATGAAATCCATTCTGAAATAGAAGAAAGTTGCAGCAGGATCAACAGAGTGTTTGGACGGCCTGGTTATGAACCTATTGTTTTTATTGACAGATCGGTTCCAATTACTGAAAAAGTTGCCTATTACAGCCTTGCTGAGTGTGTTATTGTCACAGCTGTAAGGGATGGGATGAACCTAACTCCTTATGAATATATTGTTTGTAGACAGGGAATATCTGGTCCTGAATCAAGTTCCAATGCGAATAGCCCAAAGAAGAGCATGCTTGTAATATCAGAATTTATTGGGTGTTCTCCATCGCTAAGTGGGGCTATCCGTGTCAATCCATGGAATGTTGAAGCAACTGCGGAGGCAATGAATGAAGCCATTTCAATGAGTGATGGAGAGAAGCAGTTGCGGCATGAAAAGCATTATCGGTATGTCAGCACTCATGACGTGGCTTACTGGTCACGTAGTTTCTTGCAAGACATGGAGAGGGCTTGCACGGACCTTCTTAGAAAAAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCTCTTGACCCTAACTTTAAAAAGCTCTCCATTGATGCTATGGTTTCAGCTTACAAGAGGGCAAGGAGTAGGGCCATTTTGTTGGACTATGATGGTACTGTGATGCCACAAAACTCCATTAACAAGAGTCCAAGCAAAGAGGTCATCTCTCTTTTGGAAAGTCTCTGTGCAGACCCCAAAAATGTTGTTTTCATTGTTAGTGGACGGGGTAGGGATAGCTTAAGTGAATGGTTTACTCCCTGTAAAAAACTTGGAATTGCTGCAGAACATGGGTATTTCTTGAGGTGGTCCAAGGACGGTGAATGGGAAACTTGTGGTAACTGCTCTGATTTTGGATGGATGCAGATTGCTGAACCTGTTATGAAACTATATACAGAGGCAACTGACGGTTCCAGCATTGAACGAAAAGAAAGTGCTTTGGTTTGGCAATACAGGGATGCCGACCTTGGTTTTGGATCATCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTTTGGCCAATGAGCCTGTTGCTGCAAAGAGTGGTCAGTTTATCGTTGAAGTGAAGCCCCAGGATGTGAGCAAAGGCTTAGTTGCGGATAAGATATTTTCGTCAATGACCGAAAGTGACAAACAGGCTGACTTTGTCCTGTGTGTTGGTGATGACAGATCAGATGAGGACATGTTTGAAATAGTTAGTAGTGCAATCTCAAGGAATATTCTTTCCTCCAATGCTTCTGTATTTGCTTGCACGGTTGGACAAAAGCCAAGTAAAGCAAAGTATTATCTAGATGATACGTCTGAAGTAATAAATATGCTAGAATCTTTGGCTGAAGAATCAGATTCTTCACCATGCATAGAAGAATCTGGGGATTCCTCTTGA 2586 0.4192 MMSRSYTNLLDLASGNFPAMGSGSGREFKERRRMPRVMSVPGIVSEVDDDQAVSVSSDNPSTITTDRIIIVANQLPLKANKREDNKGWNFSWNEDSLLLQLKDGFPEEMEVLYVGSLRVDIDPAEQDDVSQYLLEKFKCVPTFLPPDVLANFYDGFCKRQLWPLFHYKLPFSTDKSHRFDRHLWEAYVLANKLFFQKVVEIINPEDDYIWVHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMRMSDEECKARELKQQFEGKTILLGIDDMDIFKGINLKILAMEQMLKQHPKWQGRAVLVQIVNPARGKGIHVDEIHSEIEESCSRINRVFGRPGYEPIVFIDRSVPITEKVAYYSLAECVIVTAVRDGMNLTPYEYIVCRQGISGPESSSNANSPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMSDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRARSRAILLDYDGTVMPQNSINKSPSKEVISLLESLCADPKNVVFIVSGRGRDSLSEWFTPCKKLGIAAEHGYFLRWSKDGEWETCGNCSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADLGFGSSQAKEMLDHLESVLANEPVAAKSGQFIVEVKPQDVSKGLVADKIFSSMTESDKQADFVLCVGDDRSDEDMFEIVSSAISRNILSSNASVFACTVGQKPSKAKYYLDDTSEVINMLESLAEESDSSPCIEESGDSS* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2549 861 Gene3D Glycogen Phosphorylase B; 60 320 - -
Mtr4g2549 861 SUPERFAMILY HAD-like 597 845 IPR036412 -
Mtr4g2549 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 66 554 - -
Mtr4g2549 861 Gene3D - 596 694 IPR023214 -
Mtr4g2549 861 Gene3D - 725 854 IPR023214 -
Mtr4g2549 861 Gene3D Glycogen Phosphorylase B; 321 534 - -
Mtr4g2549 861 Pfam Trehalose-phosphatase 600 835 IPR003337 GO:0003824|GO:0005992
Mtr4g2549 861 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 858 - -
Mtr4g2549 861 TIGRFAM T6PP: trehalose-phosphatase 594 845 IPR003337 GO:0003824|GO:0005992
Mtr4g2549 861 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 599 803 IPR006379 -
Mtr4g2549 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 858 IPR001830 GO:0003824|GO:0005992
Mtr4g2549 861 CDD GT20_TPS 67 550 IPR001830 GO:0003824|GO:0005992
Mtr4g2549 861 Pfam Glycosyltransferase family 20 67 550 IPR001830 GO:0003824|GO:0005992
Mtr4g2549 861 CDD HAD_TPP 598 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2549 Mtr-Chr4 39040202 39045339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2549 1 851 Trehalose Biosynthesis Gene Families AT1G06410 77.438 0.0 1379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2549 K16055 - gmx:100800847 1601.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2549 4 39040202 39045339 Mtr4g2549 4 39040202 39045339 ECH