Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2540 ATGGCTAGCAGCAGCAACTCCTCTTCTTCAGCTCTTATGGCATTGCCAAGGAGGAAGAATTATTATGATGTGTTTGTCACCTTTAGAGGCGAAGATACTCGCTTCAACTTCATTGATCATCTTTTTGCTGCCCTTCAAAGAAAAGGCATTTTTGCATTTAGAGACGACACTAATCTTCAAAAAGGTGAATCCATACCACCCGAGCTCATTCGTGCAATTGAAGGGTCTCAGGTTTTCATTGCGGTCCTCTCCAAAAACTATGCTTCCTCAACTTGGTGCTTGCGAGAATTGGTACACATCCTTGACTGCAGTCAAGTTTCTGGAAGACGTGTTCTTCCTGTTTTTTATGATGTTGATCCTTCTGAGGTGAGACATCAAAAAGGAATTTACGGTGAAGCCTTTTCCAAACATGAACAAACATTCCAACATGAATCTCATGTGGTACAAAGTTGGAGGGAAGCTCTGACACAAGTGGGGAATATCTCTGGCTGGGATCTTCGTGATAAGCCTCAATATGCTGAGATTAAAAAGATTGTTGAAGAGATATTGAATATATTGGGTCACAACTTTTCATCTCTTCCAAAAGAACTAGTTGGTATGAATCCTCATATAGAAAAAGTAGTAAATCTATTACTTTTGGACTCGGTTGATGATGTTCGGGTTGTAGGAATTTGTGGGATGGGTGGAATAGGGAAGACAACTCTGACTACTGCTTTATATGGTCAAATCTCTCATCAATTTGATGCACGTTGTTTTATTGATGATCTAAGCAAAATATATAGACATGATGGTCAAGTTGGTGCACAAAAGCAAATTCTACACCAAACTTTTGGCAAGGAACACTTTCAGATATGCAATCTCTTTGACACGGATGATTTGATACGACGTAGGTTACGTCGGCTACGAGCACTTATCATTCTCGATAATGTTGATAAAGTTGAACAGCTCGATAAGTTAGCTTTAAATCGTGAATATTTAGGTGCAGGGAGTAGAATCATTATAATTTCTAGAGATGAGCATATCTTGAATGAGTATGGAGTTGATGAAGTTTACAAAGTTCCACTCTTGAATGAGACCAACTCTCTTCAATTATTTTGTCAAAAAGCTTTCAAACTTGAGCATGTTATGAGTGGTTATGATAAAATGGCACTTGACACACTATCTTATGCCAATGGCCTACCACTAGCTATTAAAGTATTGGGCTCATTTTTGTTTGGTCGAGATATCTCTGAATGGAGAAGTAAATTGGCTAGATTGAGAGAATGTCCAATCAAAGATATTATGGATGTGTTGCGATTAAGTTTTGAAGGGCTAGAGAATATGGAAAAAGATATATTTCTTGATATTGCTTGTTTTTTCAAAGGGTACAACAAGGAATGTGTTACAAATATTCTAAATTGTCGTGGGTTTCATGCTGATATCGGATTAAGAATTCTCATTGATAAATCCCTTATAAGCATTTCTTACGGAACTAATATTACAATGCATAGTTTGTTGGTAGAGTTGGGCCGGAAAATTGTTCAAGAAAATTCGACCAAAGACTTGAGAAAGTGGAGCAGGTTGTGGTCCCTCGAACATTTCAACAATGTAATGTTGGAGAATATGGAAAAGAATGTTGAAGCCGTAGTTATTTGTCATCCAAGACAAATAAAAACATTGGTGGCGGAAACATTGTCAAGTATGAGTCATCTTAGATTACTTATATTTGACAGGGGTGTGTATATTTCAGGAAGCCTGAATTATCTTTCAAATGAATTGAGATATTTTAAGTGGACATGCTATCCTTTCATGTGTTTGCCAAAAAGTTTTCAGCCCAACCAGCTTGTTGAACTTTATTTGTGGCGTAGCAGCATCCAACAACTATGGGAAGGCAAGAAGTATCTGCCCAATTTGAAAACTATGGATCTGATGTACTCCAAACACCTAATCAAGATGCCAAATTTTGGAGAGGTTCCAAATCTTGAGCGGCTGAATCTCGACGGATGTGTAAATCTTGTGCAAATAGATCCATCTATTGGTCTTCTGAGAAAGCTTGTATTCTTGAACTTGAAAAATTGCAAAAATCTAATAAGCATACCTAACAACATATTTGGTCTCACCTCTCTTAAATATCTAAATCTTTCCTGGTGTTCCAAAGTGTTTACCAATACAAGGCATTTGAATAAACTTGATTCGAGTGAAATTGTATTACATTCCCAGTCAACAACTTCCTCCTTGTATCATAATGCAGACAAAGGTTTAGTTAGTCGTTTGTTGTCATCCTTGCTTAGCTTTTCCTTTTTGTGGGAACTTGATATTAGTTTTTGTGGTCTGAGCCAAATGCCAGATGCAATTGGATGTATACCATGGCTAGGAAGATTAATTTTAATGGGAAACAATTTTGTGACTCTGCCTAGTTTCAGGGAGCTTTCTAATCTGGTATATTTAGACTTACAGCACTGCAAGCAATTGAAATTTTTGCCTGAGCTCCCTTTGCCTCACTCTTCACCTTCTGTTATCAAGTGGGATGAATATTGGAAGAAGTGGGGATTGTATATTTTCAACTGTCCTGAATTGGGGGAGAAGGATCAATATAGTAGCATGACTTTATTATGGTTGATACAATTTGTTCAGGCTAACCAAGAATCTCTTGCCTGCTTTCGTGGGACTATTGGTATCGTTATTCCTGGAAGTGAAATACCAAGCTGGTTGAACAACCAGTGCGTAGGTAAATCAACACGCATAGACTTATCTCCTACTTTGCATGACAGTAATTTCATTGGCCTTGCTTGTTGTGTCGTATTTTCTGTGACATTTGATGATCCAACTATGACAACAAAGGAATTCGGACCAGACATATCGCTAGTTTTTGATTGTCATACTGCTACACTTGAATTTATGTGTCCGGTAATTTTTTATGGAGATCTTATTACACTCGAATCAAACCACACATGGCTAATATATGTCCCTAGGGATTCTCTGAGCTATCAGAACAAAGCATTCAAAGATGTTGATCATATCACAATGACAGCTTGCCTTGAGGACGGAAACGGGTTGCATGTGGATGTGAAAACATGTGGGTATCGTTATGTATTCAAACAGGATCTAAAACAGTTTAACTCAACAGTGATGCACCACAGAAATCCGTTTGCACAGAAGCGCAAGTTTTTGGCAATTGAAGATTAG 3165 0.3782 MASSSNSSSSALMALPRRKNYYDVFVTFRGEDTRFNFIDHLFAALQRKGIFAFRDDTNLQKGESIPPELIRAIEGSQVFIAVLSKNYASSTWCLRELVHILDCSQVSGRRVLPVFYDVDPSEVRHQKGIYGEAFSKHEQTFQHESHVVQSWREALTQVGNISGWDLRDKPQYAEIKKIVEEILNILGHNFSSLPKELVGMNPHIEKVVNLLLLDSVDDVRVVGICGMGGIGKTTLTTALYGQISHQFDARCFIDDLSKIYRHDGQVGAQKQILHQTFGKEHFQICNLFDTDDLIRRRLRRLRALIILDNVDKVEQLDKLALNREYLGAGSRIIIISRDEHILNEYGVDEVYKVPLLNETNSLQLFCQKAFKLEHVMSGYDKMALDTLSYANGLPLAIKVLGSFLFGRDISEWRSKLARLRECPIKDIMDVLRLSFEGLENMEKDIFLDIACFFKGYNKECVTNILNCRGFHADIGLRILIDKSLISISYGTNITMHSLLVELGRKIVQENSTKDLRKWSRLWSLEHFNNVMLENMEKNVEAVVICHPRQIKTLVAETLSSMSHLRLLIFDRGVYISGSLNYLSNELRYFKWTCYPFMCLPKSFQPNQLVELYLWRSSIQQLWEGKKYLPNLKTMDLMYSKHLIKMPNFGEVPNLERLNLDGCVNLVQIDPSIGLLRKLVFLNLKNCKNLISIPNNIFGLTSLKYLNLSWCSKVFTNTRHLNKLDSSEIVLHSQSTTSSLYHNADKGLVSRLLSSLLSFSFLWELDISFCGLSQMPDAIGCIPWLGRLILMGNNFVTLPSFRELSNLVYLDLQHCKQLKFLPELPLPHSSPSVIKWDEYWKKWGLYIFNCPELGEKDQYSSMTLLWLIQFVQANQESLACFRGTIGIVIPGSEIPSWLNNQCVGKSTRIDLSPTLHDSNFIGLACCVVFSVTFDDPTMTTKEFGPDISLVFDCHTATLEFMCPVIFYGDLITLESNHTWLIYVPRDSLSYQNKAFKDVDHITMTACLEDGNGLHVDVKTCGYRYVFKQDLKQFNSTVMHHRNPFAQKRKFLAIED* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2540 1054 Pfam NB-ARC domain 203 423 IPR002182 GO:0043531
Mtr4g2540 1054 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 640 700 - -
Mtr4g2540 1054 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 23 631 - -
Mtr4g2540 1054 Pfam TIR domain 22 192 IPR000157 GO:0007165
Mtr4g2540 1054 Gene3D Ribonuclease Inhibitor 507 741 IPR032675 -
Mtr4g2540 1054 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 164 IPR035897 -
Mtr4g2540 1054 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 631 IPR044974 GO:0006952
Mtr4g2540 1054 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 640 700 IPR044974 GO:0006952
Mtr4g2540 1054 Gene3D - 19 186 IPR035897 -
Mtr4g2540 1054 SUPERFAMILY "Winged helix" DNA-binding domain 426 529 IPR036390 -
Mtr4g2540 1054 Gene3D - 187 350 IPR027417 -
Mtr4g2540 1054 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Mtr4g2540 1054 Gene3D - 355 439 IPR042197 -
Mtr4g2540 1054 PRINTS Disease resistance protein signature 221 236 - -
Mtr4g2540 1054 PRINTS Disease resistance protein signature 297 311 - -
Mtr4g2540 1054 PRINTS Disease resistance protein signature 390 404 - -
Mtr4g2540 1054 PRINTS Disease resistance protein signature 801 817 - -
Mtr4g2540 1054 Pfam C-JID domain 888 1029 IPR045344 -
Mtr4g2540 1054 SUPERFAMILY L domain-like 549 822 - -
Mtr4g2540 1054 SMART till_3 21 161 IPR000157 GO:0007165
Mtr4g2540 1054 Gene3D Ribonuclease Inhibitor 742 831 IPR032675 -
Mtr4g2540 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2540 Mtr-Chr4 38979445 38987093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2540 22 713 WRKY Transcription Factor Family AT4G12020 31.735 7.48e-85 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2540 - - mtr:MTR_4g080070 2083.15