Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2539 ATGGCTAGCAGCAGCAACTCCTCTTCTTCAGCTCTTATGGCATTGCCAAGGAGGAAGAATTATTATGATGTGTTTGTCACCTTTAGAGGCGAAGATACTCGCTTCAACTTCATTGATCATCTTTTTGCTGCCCTTCAAAGAAAAGGCATTTTTGCATTTAGAGACGACGCTAATCTTCAAAAAGGTGAATCCATACCACCCGAGCTCATTCGTGCAATTGAAGGGTCTCAGGTTTTCATTGCGGTCCTCTCCAAAAACTATTCTTCCTCAACTTGGTGCTTGCGAGAATTGGTACACATCCTTGACTGCAGTCAAGTTTCTGGAAGACGTGTTCTTCCTGTTTTTTATGATGTTGATCCTTCTGAGGTGAGACATCAAAAAGGAATTTACGGTGAAGCCTTTTCCAAACATGAACAAACATTCCAACATGACTCTCATGTGGTACAAAGTTGGAGGGAAGCTCTGACACAAGTGGGGAATATCTCTGGCTGGGATCTTCGTGATAAGCCTCAATATGCTGAGATTAAAAAGATTGTTGAAGAGATATTGAATATATTGGGTCACAACTTTTCATCTCTTCCAAAAGAACTAGTTGGTATGAATCCTCATATAGAAAAAGTAGTAAATCTATTACTTTTGGACTCGGTTGATGATGTTCGGGTTGTAGGAATTTGTGGGATGGGTGGAATAGGGAAGACAACTCTGGCTACTGCTTTATATGGTCAAATCTCTCATCAATTTGATGCACGTTGTTTTATTGATGATCTAAGCAAAATATATAGACATGATGGTCAAGTTGGTGCACAAAAGCAAATTCTACACCAAACTCTTGGCAAGGAACACTTTCAGATATGCAATCTCTTTGACACGGATGATTCGATACGACGTAGGTTACGTCGGCTACGAGCACTTATCATTCTCGATAATGTTGATAAAGTTGAACAGCTCGATAAGTTAGCTTTAAATCGTGAATGTTTAGGTGTAGGGAGTAGAATCATTATAATTTCTAGAGATGAGCATATCTTGAATGAGTATGGAGTTGATGAAGTTTACAAAGTTCCACTCTTGAATGAGACCAACTCTCTTCAATTATTTTGTCAAAAAGCTTTCAAACTTGATCATATTATGAGTGGTTATGATAAACTGGCACTTGACACGCTATCTTATGCCAATGGCCTACCACTAGCAATTAAAGTATTGGGCTCATTTTTGTTTGGTCGAGATATCTCCGAATGGAGAAGTGCATTGGCTAGATTGAAAGAAAGTCCAAACAAAGATATTATGGATGTGTTGCGATTAAGTTTTGATGGATTGGAGAATTTGGAAAAAGAAATATTTCTTGATATTGCTTGTTTTTTCGAAAGGTACGATAAGGAATGTCTTACAAATATTCTAAATTGTTGTGGATTTCATCCAGATATCGGATTAAGAATTCTTATTGATAAATCCCTTATAAGCTTTTATCACGGAGGTTGTGTAATGCATAGTTTGTTGGTAGAGTTGGGGAGGAAGATTGTTCAAGAAAATTCGACCAAAGACTTGAAAAAGTGGAGCAGGTTGTGGTTCCCCGAACATTTCGACAATGAAAAGAACGTCCAAGCCATAGTTTTGGCCTACCACAGTCCAAGACAAATAAAAAAATTCGCAGCGGAAACATTGTCAAATATGAATCATATTAGGTTACTTATACTCGAGAATACGTACTTTTCAGGAAGCCTCAATTACCTTTCAAATGAATTGAGATATGTTGAATGGAACAGATATCCTTTCACGTATTTGCCTAAGAGTTTTCAGCCCAACCAACTTGTTGAACTTCATTTGAGCTATAGCAGCATCAAACAACTATGGAAAGGCAAGAAGTATCTACCCAATTTGAGAATTATGGATCTGATGCACTCCAGAAACCTAATCAAGCTGCCAGATTTTGGAGAGGTTCCAAATCTTGAGATGCTGAATCTGGCAGGATGTGTAAATCTGATAAGCATACCCAACAGCATATTTGTTCTCACCTCTCTTAAATATCTAAATCTTTCTGGGTGTTCCAAAGTGTTTAACTATCCAAAGCATTTGAAGAAACTTGATTCGAGTGAAACTGTACTACATTCCCAATCAAAAACTTCCTCCTTGATATTGACCACGATTGGTTTACATTCCTTGTATCAGAATGCACACAAAGGTTTAGTTAGTCGTTTGTTGTCATCCTTGCCTAGCTTTTTCTTTTTGCGGGAACTTGATATTAGTTTTTGCGGTCTAAGCCAAATCCCAGATGCTATTGGATGTATACGATGGTTAGGAAGATTAGTTTTATCGGGAAACAATTTTGTGACTCTGCCTAGTCTCAGGGAGCTTTCTAAACTTGTATATTTAGACTTGCAGTACTGCAAGCAGTTAAATTTTTTGCCTGAGCTCCCTTTGCCTCACTCTTCAACTGTTGGTCAAAATTGTGTGGTGGGATTGTATATTTTTAACTGTCCTGAATTGGGGGAGAGGGGTCATTGTAGTAGAATGACTTTATCATGGTTGATACAATTTCTTCATGCCAACCAAGAATCCTTTGCTTGCTTTCTTGAGACTGATATTGGTATTGTTATTCCTGGAAGTGAAATACCAAGGTGGTTGAACAATCAGAGCCTAGGTAATTCAATGAGCATAAACCTATCTTCCATTGTGCATGACAAAGATTTTATTGGCCTTGTAGCCTGTGTAGTATTTTCTGTGAAACTTGATTATCCAAATATTACAACAAATGAACTTGAAAATAATATATGCATAAGTCTTGATGAAGATCATACTCGTACTGGTTATGGATTCAATTTTAGTTGTCCGGTAATTTGTTATGCGGATCTTTTTACACCGGAATCAGACCACACATGGCTATTATATCTCCCTTGGGATCGCCTGAATCCAGACAAAACATTCAGGGGTTTTGATCATATCACAATGACAACTTTCATTGATGAAAGAGAAGGTTTGCATGGGGAGGTGAAGAAATGTGGGTATCGTTGCATATTTAAACAGGATCAACAACAGTTTAACTCAACAATGATGCACCACAGAAATTCATCTTCACAAAAGCGCAAGTTTTTGGCAATTGAAGATTAG 3102 0.3778 MASSSNSSSSALMALPRRKNYYDVFVTFRGEDTRFNFIDHLFAALQRKGIFAFRDDANLQKGESIPPELIRAIEGSQVFIAVLSKNYSSSTWCLRELVHILDCSQVSGRRVLPVFYDVDPSEVRHQKGIYGEAFSKHEQTFQHDSHVVQSWREALTQVGNISGWDLRDKPQYAEIKKIVEEILNILGHNFSSLPKELVGMNPHIEKVVNLLLLDSVDDVRVVGICGMGGIGKTTLATALYGQISHQFDARCFIDDLSKIYRHDGQVGAQKQILHQTLGKEHFQICNLFDTDDSIRRRLRRLRALIILDNVDKVEQLDKLALNRECLGVGSRIIIISRDEHILNEYGVDEVYKVPLLNETNSLQLFCQKAFKLDHIMSGYDKLALDTLSYANGLPLAIKVLGSFLFGRDISEWRSALARLKESPNKDIMDVLRLSFDGLENLEKEIFLDIACFFERYDKECLTNILNCCGFHPDIGLRILIDKSLISFYHGGCVMHSLLVELGRKIVQENSTKDLKKWSRLWFPEHFDNEKNVQAIVLAYHSPRQIKKFAAETLSNMNHIRLLILENTYFSGSLNYLSNELRYVEWNRYPFTYLPKSFQPNQLVELHLSYSSIKQLWKGKKYLPNLRIMDLMHSRNLIKLPDFGEVPNLEMLNLAGCVNLISIPNSIFVLTSLKYLNLSGCSKVFNYPKHLKKLDSSETVLHSQSKTSSLILTTIGLHSLYQNAHKGLVSRLLSSLPSFFFLRELDISFCGLSQIPDAIGCIRWLGRLVLSGNNFVTLPSLRELSKLVYLDLQYCKQLNFLPELPLPHSSTVGQNCVVGLYIFNCPELGERGHCSRMTLSWLIQFLHANQESFACFLETDIGIVIPGSEIPRWLNNQSLGNSMSINLSSIVHDKDFIGLVACVVFSVKLDYPNITTNELENNICISLDEDHTRTGYGFNFSCPVICYADLFTPESDHTWLLYLPWDRLNPDKTFRGFDHITMTTFIDEREGLHGEVKKCGYRCIFKQDQQQFNSTMMHHRNSSSQKRKFLAIED* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2539 1033 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Mtr4g2539 1033 SUPERFAMILY L domain-like 525 814 - -
Mtr4g2539 1033 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 624 IPR044974 GO:0006952
Mtr4g2539 1033 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 633 699 IPR044974 GO:0006952
Mtr4g2539 1033 SUPERFAMILY "Winged helix" DNA-binding domain 426 525 IPR036390 -
Mtr4g2539 1033 Gene3D - 355 439 IPR042197 -
Mtr4g2539 1033 PRINTS Disease resistance protein signature 221 236 - -
Mtr4g2539 1033 PRINTS Disease resistance protein signature 297 311 - -
Mtr4g2539 1033 PRINTS Disease resistance protein signature 390 404 - -
Mtr4g2539 1033 PRINTS Disease resistance protein signature 781 797 - -
Mtr4g2539 1033 Pfam C-JID domain 864 1008 IPR045344 -
Mtr4g2539 1033 Gene3D - 16 184 IPR035897 -
Mtr4g2539 1033 SMART till_3 21 161 IPR000157 GO:0007165
Mtr4g2539 1033 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 23 624 - -
Mtr4g2539 1033 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 633 699 - -
Mtr4g2539 1033 Pfam NB-ARC domain 203 425 IPR002182 GO:0043531
Mtr4g2539 1033 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 164 IPR035897 -
Mtr4g2539 1033 Pfam TIR domain 22 192 IPR000157 GO:0007165
Mtr4g2539 1033 Gene3D - 185 350 IPR027417 -
Mtr4g2539 1033 Gene3D Ribonuclease Inhibitor 506 712 IPR032675 -
Mtr4g2539 1033 Gene3D Ribonuclease Inhibitor 713 849 IPR032675 -
Mtr4g2539 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2539 Mtr-Chr4 38972748 38977160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2539 22 790 WRKY Transcription Factor Family AT4G12020 30.566 3.39e-83 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2539 - - mtr:MTR_4g080070 1561.97