Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2526 ATGGAAATGGAAGGTTATGATATATTTGGAGATGCTACTGAGAGAATTGGTAAAAATGGTTTTGAAGTAAACAATGAGGTAATTGGAAGTGGGTATGGTTCAAGTTTCTCTCTGGTTTTGGATAGGGAGAGAGGGGAGCTTGTAGAGGAACCTGTTAAAATGGAAGGAAAGGGTGTGTCCACTACAGAGAGAAGTGTTGAAGCTTTGAAGAATCATAGTGAGGCAGAAAGGAGGAGAAGAGCTAGGATTAATGCACATCTTGATACTCTTCGTTGTGTCATTCCAGGTGCTTTGAAGATGGACAAAGCATCATTACTTGGTGAAGTAGTTAGACACTTGAAAGAGCTAAAAAGGAATGAAACACAAGCATGTGAAGGTTTAATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAAGAGGGAGGTTGGAACGGTTTTCCTTTTTCAATTAAAGCATCACTATGTTGTGAATATCAACCAGGTTTATTGTCTAATATAAGACAAGCCCTAGATGCTCTTCATCTCATCATCATGAAAGCAGATATTGCAACTTTTGGAGACAGAATGAAGAATGTCTTTGTTGTAATAAGCTGTGAAGAACAAAACTTTGATGCTGCTGAATACAGACAGTTTCTTGCTGGTTCTGTTCACCAAGCTCTTAAGTCTGTACTTAGTAGATTTTCTGTTTCACAGGATATGCTAAGAGCAAGAAAAAGAAGGAGGGTTTCTATATTCAGTTCTTCATCTTTAGAAAATTTCTTATAA 771 0.3722 MEMEGYDIFGDATERIGKNGFEVNNEVIGSGYGSSFSLVLDRERGELVEEPVKMEGKGVSTTERSVEALKNHSEAERRRRARINAHLDTLRCVIPGALKMDKASLLGEVVRHLKELKRNETQACEGLMIPKDNDEISVEEQEGGWNGFPFSIKASLCCEYQPGLLSNIRQALDALHLIIMKADIATFGDRMKNVFVVISCEEQNFDAAEYRQFLAGSVHQALKSVLSRFSVSQDMLRARKRRRVSIFSSSSLENFL* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2526 256 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
Mtr4g2526 256 SMART finulus 73 122 IPR011598 GO:0046983
Mtr4g2526 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 119 IPR036638 GO:0046983
Mtr4g2526 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
Mtr4g2526 256 Gene3D - 62 124 IPR036638 GO:0046983
Mtr4g2526 256 CDD ACT_UUR-ACR-like 155 226 - -
Mtr4g2526 256 PANTHER TRANSCRIPTION FACTOR BHLH30 7 255 IPR045847 GO:0003700|GO:0006355
Mtr4g2526 256 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 255 - -
Mtr4g2526 256 Coils Coil 256 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2526 Mtr-Chr4 38831896 38834436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2526 5 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 37.450 6.93e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g2526 HLH 9.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2526 - - gmx:100784966 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2526 4 38831896 38834436 Mtr4g2526 4 38831896 38834436 ECH