Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2516 ATGAGGAGTACTGGAGGAGAGATAGTTCAAGTAGAAGGAGGACACATAGTTCGAGCCACCGGTAAAAAAGATCGTCACAGCAAGGTTTACACATCAAAAGGTCCTCGCGATCGCAGGGTTCGACTCTCAGCACACACAGCCATCGAATTCTACGATGTTCAAGATCGCCTCGGCTACGACAGACCAAGCAAAGCAGTGGATTGGCTCATCAAGAAAGCAAAGTCTTCCATTGACAAGCTCGCGGAGCTTCCTCCATGGCATCCAATCAGCGAAAATCAAACTCTGAAACCTCTAGAAGAAGTTCAGAATGTAGTTGCAAACTCAAGTGGAATGGTTGTTGGAGAAACATCAGAATCTAATGGTTACAGTTTTCATCTTTTAAGACAATTAAGTGAGAATCAAGGTAACCATAATTCAGCTTTCATTTCACCACATAATGTTGAAACTGATCCTATACCTTTTTTTCCAACTACATCTTCTACTTCTTCATCCATCAATTTTCAAAACTACCCTTCTGAAAACCTTGGCCTCTCTCTTCATTCCTTCCAAGATCACAATGGTTTCATTCCATGGCAATCACAACAAGTATGTGAAAACCATGAAACTTCAAATGAAAACCAAAACCAAAACCAAACCTTTTTTGAGAACCAATATCATAGAATTGAGAATTGGAACAATGAAACAACCAATGATTATATAAAGAAAGTTGGATTCATGGTAAACTCACAGTCATTTCTAGGCCAAGGTTCCGGTTCAGAATACTCTCCAAACGAGACCCTTCAGTCAAATTTTTCGCATTCTGTTAGAACATGGAATGAGATTCCTATGGATTCTTCTTCAGAGGTTCATCATCACAGGTCTCAACAAGTTCATCAAGCTTCAATCTTTGGAAGCAGGTTTGTTTCTGATGGATTAGCAGGTTTCTGCATTCCTGATACAGTTCAAGGTGGAGAAGAGGGTCATAGAGTTTCTTCTAATAGACCTTCTTCTTCTCCTAATCACAACTGA 1008 0.3998 MRSTGGEIVQVEGGHIVRATGKKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWHPISENQTLKPLEEVQNVVANSSGMVVGETSESNGYSFHLLRQLSENQGNHNSAFISPHNVETDPIPFFPTTSSTSSSINFQNYPSENLGLSLHSFQDHNGFIPWQSQQVCENHETSNENQNQNQTFFENQYHRIENWNNETTNDYIKKVGFMVNSQSFLGQGSGSEYSPNETLQSNFSHSVRTWNEIPMDSSSEVHHHRSQQVHQASIFGSRFVSDGLAGFCIPDTVQGGEEGHRVSSNRPSSSPNHN* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2516 335 Pfam TCP family transcription factor 20 157 IPR017887 -
Mtr4g2516 335 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Mtr4g2516 335 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 332 IPR005333 GO:0003700
Mtr4g2516 335 PANTHER TRANSCRIPTION FACTOR TCP4 3 332 - -
Mtr4g2516 335 MobiDBLite consensus disorder prediction 319 335 - -
Mtr4g2516 335 MobiDBLite consensus disorder prediction 312 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2516 Mtr-Chr4 38723031 38725034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2516 6 331 TCP Transcription Factor Family AT1G53230 37.260 6.71e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Mtr4g2516 TCP 1.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2516 - - gmx:100814907 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2516 4 38723031 38725034 Mtr2g2567 2 38602011 38603826 ECH
Mtr4g2516 4 38723031 38725034 Mtr8g1665 8 24588897 24591751 ECH
Mtr4g2516 4 38723031 38725034 Mtr4g2516 4 38723031 38725034 ECH