Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2503 ATGGGAGGTTTTCCGGTAGGTTCAAAGAAGAAGAAAAACAACAAAAATCAACACGGTTTCGAAACCCTAGGTCTAAACCGCGATGTATTCAGTGGAATCAAACGCAAAGGCTACAAAGTTCCTACTCCAATTCAGCGAAAAACGATGCCTCTCATTCTCTCCGGTATCGACGTCGTTGCTATGGCTCGTACTGGTTCCGGTAAAACGGCGGCGTTTCTTGTTCCGATGCTTCACCGACTTAATCAGCATGTTCCTCAGGGTGGCGTTAGAGGACTTATTTTGTCACCGACTAGAGATTTAGCGCAACAGACATTGAAGTTCACCAAAGAGCTTGGTCACTTCACAGACCTTCGTGTCAGTTTGTTAGTTGGCGGTGATAGTATGGAAAGTCAGTTTGAGGAGTTAGCTCAGAATCCAGATATTATAATTGCCACTCCCGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCCTTGCGTAAGGTGGAGTATGTTGTTTTTGACGAGGCGGATTGTTTATTTGGTATGGGTTTTGCTGAGCAGCTCCATCAAATTCTTGCCCAGCTTGGTGAGAACCGTCAAACCTTGCTTTTCAGTGCCACATTACCCAGCGCTCTTGCAGAATTTGCTAAGGCCGGTCTGCGAGACCCTCGTCTTGTTCGCCTCGATTTGGAAACTAAAATCAGCCCTGACTTGAAGCTTGTCTTTTTCACTTTGAGGCAGGAAGAGAAATACGCTGCTTTGCTCTATTTAATTAGGGAACTTATCGGTTCTGATGAGCAGACTTTAATTTTTGTATCCACTAAACACCATGTTGAGTTTCTCAACTCGTTGTTTCAACTAGAGGGTATTAGGCCTTCTGTATGTTATGGAGACATGGATCAAGACGCTCGTAAAGAACATGTGGCCAGGTTTAGGTCAAGAAAGACAATGTTGTTGATTGTCACCGACATTGCTGCTCGGGGCATTGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTTCCTCCTAAGCCTAAAATATTTGTTCATCGAGTTGGACGGGTTGCAAGGGCTGGTCGTACTGGTACCGCATATTCTTTCTTGACTGCCGAGGATATGGCTTATCTCTTGGATCTTCATTTGTTTCTCTCAAAACCAGTCAAAGCTGCTCCAACTGAGGAAGAAGTCTTGCGGGATATGGATGGAGTGATGTCAAGAATTGACGACGAAATGTTAAATGGAGAAACCATTTATGGTCGTTTCCCTCAAAAAGTCATTGACCTTGTTTCTGACAGAGTTAGGGAAGTTATTGATACTTCTGCGGAGCTGGAAGCATTGCAGAGAGCCTGTAAAAATGCATTTCGTTTATACTCTAAAACAAAACCCTTACCCTCAAAGGAGTCCATCAGAAGAGTAAAGGATTTGCCACATGAAGGTCTGCATCCGATTTTCAACAAAGTGTTGGGAACAGGGGAGTTAACGGCAATTGCGTTTTCTGAGCATTTGAAAAATTTTAGGCCAAAGCAGACCATTTTGGAAGCGGAAGGAGAAGCAGCTAAAGCTAAGCGTAGAGCAGGCCCTTCTGGTCATTGGGTTGATGTGATGAAAAGGAAAAGAGCCGTTCATGATAGTATTATAGTTAATGAACAGCATTCGAAGAGTAATGAACACCAATCGAAGAGTAATAGTGAAAAGGAGGAAAATCAACCGGAAATTACTTCTTCCATGGATAAAGGGAGAAAAGCAGCACGTGGCTCTAAGCGAAAGCCAAATCCAGAAAGTTTCAAGGACGAGGAATACTTTATAAGTTCCATACCTCAAAATCAACACATGGAGGCAGGCCTTGCGGTAAAAGCTAATGAAGGCTTTTCTTCAAACAGATTGGATGATGCTGTCCTAGATCTAGGTGCAGATGATGGTGCTGGCATTAAGAAACAAAAATCTGTGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAACGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCCAACAAGACTGGTATATATAAAAAGTGGAAGGAACGCTCACACTCCAAGATATCTCTTAAAGGGACAAGTGCCGATGGTGATGCTCAGGAATCAAGAAGTTCAAGAGGATCTTACCAAGGAGGTGGTAGGAATTACAAAGGCGGCAAGAAGCAGCATTTAATGCCCAATGCTCATGTCCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAAGAAAGCCAGCAAAATTTCTTATATGAAGAGCAAGTCGCCAAAGGGTAAAAAATCGGGCAAACCTGGCAGAAAGGGAGGAAATAAAAGAAAATCCAAGTAG 2367 0.4301 MGGFPVGSKKKKNNKNQHGFETLGLNRDVFSGIKRKGYKVPTPIQRKTMPLILSGIDVVAMARTGSGKTAAFLVPMLHRLNQHVPQGGVRGLILSPTRDLAQQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPRLVRLDLETKISPDLKLVFFTLRQEEKYAALLYLIRELIGSDEQTLIFVSTKHHVEFLNSLFQLEGIRPSVCYGDMDQDARKEHVARFRSRKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRVARAGRTGTAYSFLTAEDMAYLLDLHLFLSKPVKAAPTEEEVLRDMDGVMSRIDDEMLNGETIYGRFPQKVIDLVSDRVREVIDTSAELEALQRACKNAFRLYSKTKPLPSKESIRRVKDLPHEGLHPIFNKVLGTGELTAIAFSEHLKNFRPKQTILEAEGEAAKAKRRAGPSGHWVDVMKRKRAVHDSIIVNEQHSKSNEHQSKSNSEKEENQPEITSSMDKGRKAARGSKRKPNPESFKDEEYFISSIPQNQHMEAGLAVKANEGFSSNRLDDAVLDLGADDGAGIKKQKSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKANKTGIYKKWKERSHSKISLKGTSADGDAQESRSSRGSYQGGGRNYKGGKKQHLMPNAHVRSEIKDMDQIRKERQKKASKISYMKSKSPKGKKSGKPGRKGGNKRKSK* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2503 788 MobiDBLite consensus disorder prediction 543 594 - -
Mtr4g2503 788 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Mtr4g2503 788 MobiDBLite consensus disorder prediction 1 20 - -
Mtr4g2503 788 SMART DBP10CT_2 631 693 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Mtr4g2503 788 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Mtr4g2503 788 SMART helicmild6 271 356 IPR001650 -
Mtr4g2503 788 MobiDBLite consensus disorder prediction 685 699 - -
Mtr4g2503 788 MobiDBLite consensus disorder prediction 673 788 - -
Mtr4g2503 788 MobiDBLite consensus disorder prediction 736 760 - -
Mtr4g2503 788 MobiDBLite consensus disorder prediction 700 721 - -
Mtr4g2503 788 CDD SF2_C_DEAD 244 365 - -
Mtr4g2503 788 MobiDBLite consensus disorder prediction 761 788 - -
Mtr4g2503 788 CDD DEADc_DDX54 19 223 - -
Mtr4g2503 788 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 10 782 - -
Mtr4g2503 788 Gene3D - 4 225 IPR027417 -
Mtr4g2503 788 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Mtr4g2503 788 SMART ultradead3 37 237 IPR014001 -
Mtr4g2503 788 Gene3D - 235 463 IPR027417 -
Mtr4g2503 788 Pfam DBP10CT (NUC160) domain 631 692 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Mtr4g2503 788 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Mtr4g2503 788 MobiDBLite consensus disorder prediction 543 593 - -
Mtr4g2503 788 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Mtr4g2503 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Mtr4g2503 788 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 10 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2503 Mtr-Chr4 38587009 38596617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2503 20 389 Eukaryotic Initiation Factors Gene Family AT1G72730 32.440 1.03e-55 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2503 K14808 - gmx:100806274 1229.54