Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2488 ATGGAAGCTTGTTCAGAAGGACATGAGAACAAGAACAAACCATTGGAGGAAGAGAACAGAGTGAAGCGCAAAAAGAAGACTCCTTCACAGTTGGAGATTCTTGAAAAAACTTATGCTATGGAGACTTACCCTTCTGAGGCAACGAGGGGTGAGTTAGCTGTGAAGTTGGGTTTGTCTGATCGTCAATTGCAGATGTGGTTCTGTCACCGGAGACAGAAGGATCGAAAGGCTGTGGCACCGGCTGGGCCGAGTTCGGTTCCAATGAGGGATGGTGTTGTGAAGATAGAAGTTACTGATGTTAGGAATGTTTCTGATTTCGTTTCTGACTTGCGGCCAATTGGTGGTATGGACTTGCTGGGAGTTGTGCCGCTGCATGAGGTGATGGGCTTTCGTAGGATGGGAGCTGCATTGTCTGAAATGGATAGCAGTAGTTCTCATGAACCCCATCAGACGTTACATGAGTTGCAAGCTATTGCATTCGTGGAAAGTCAGTTGGGGGAGTCGTTAAGAGATGATGGACCTATTCTTGGGATGGAATTTGATTCTGTGCCGCTGGGTGCATTTGGTGCACCATTAGAGGCAGTGGCAGTGGGGCAATGCAGACAACCTGAATTGTCTGTCGAGGCAAAAGTTTATGAAAGTCTGGATAAGGGCGTTTCAAAGATTCTCCATGAATATCAATTTATTCCAGAGCAGCCAACTGTTAAAAATGAGATATCCGAGAGAGTTACTACAGCTATCCACTTTAGCTCTCTTGGTGGTGTTCCACATTCTAGGACTTCATTATCTAGTGGGGCATATTTCCTTAATGGGAACGAATCTGCACATAATGTGTATGGAGTCCAAGGAGGAAATGATGATGTTCCAAGAATGAACCCATTTGTCGATGTAACTCTTGAGACTCAAATGAGGGCTCACCAAGTAACCCCTAAGGACGGCGGTCTAGTGCCATTTGATAGTAGGGTTATTCATGAGGAGGAGTTTTCAAGGTTTCAAAGGAAGCGAAAGAATGAAGAGGCTAGAATGCAACGAGAACTCGAAGTGCAAGAGAAAAGAATTAGAAAAGAGCTTGTAAAACAGGAAATTCTAAGGCAAAAGAGAGAGGAACAGATAAAAAAAGAGATGGAGAGGCATGATCGTGAAAGGCAGAAGGAAGAGGAAAGGTTATTGCGTGAAAGACAGCGAGAGGAGGAGAGATTCCTTAGAGAACAGAGGCGTGAGCAGGAGCAGCGAGAGAAGTTTTTGCAGAAGGAGTCAATCAGAATTGAGAAGCTGAGACAGAAGGAGGAACTACAGAGGGTGAAAGAGGCAGCTAGGATTAAAGCTGCCAGCGAGAGAGCTGTTGCCCGCAGAATGGTCAAAGATGCAATGGACCTTATTGAAGATGAACGTCTGGAACTCATGGAATTAGCTGCATCAAAGAAGGGGTTATCTTCAATACTGGCTCTTGACTACGAAACTATGCAAAATCTGGAATCATACCGAGATGGGCAGACTTCCTTTCCACCCAAGTCTGTACAGTTAAAAAGAGCTTTTTCAATTCAACCTTGGTCAGATTCTGACGAGAATGTTGGAAATCTTCTGATGGTTTGGAGGTTCTTGATTACCTTTGCTGATATTCTTGGAATATGGCCATTTACGTTGGATGAGCTTATACAAGCTTTTCACGACTATGATCCTAGAATATTAGGTGAGATCCATATTGCTCTTCTGAGATCCATTATAAAAGATATTGAAGATGTTGCAAGAACACCCACTACTGGATTAGGAGGGAACCAAAACAGTTATACGAACTCTGGTGGCGGGCATCCTCAAGTAGTTGAAGGGGCGTATGTATGGGGTTTTGATATAAGAAATTGGCAGCGGCATTTAAATCCATTAACATGGCCGGAGATTTTGCGACAATTTGCATTGTCAGCTGGATTTGGGCCTCAGTTGAAGAAACATAATATTGAGCAGGTGCATCCTAGCAACAATGAGGTTAATGATGGTAAAGATATAATTTCTAATCTACGCAGTGGAGCTGCTGTTGAGAATGCTGTTGCTATTATGCAAGAGAAGGGATTATCTAATCCAAGAAGGCATAAGCATCGTTTGACGCCTGGAACTGTGAAATATGCTGCATTTTATGTCCTAGCTCTGGAAGGAAATAGAGGCCTCAATATATTGGAAATTGCAGACAAGATTCAGAAATCTGGACTTCGTGATCTTACAACAAGCAAATCACCAGAGGCTGCTATTGCTTCTGCTTTGTCTAGAGATACAGAACTATTTGAAAGGACAGCTCCTTCAACATATTGTGTACGTCCTGTATATAGAAAGGACCCAGCCGATTCTGAAGCAATTTTTTCAGCTGCCAGGGAAAGAATCAGGATATTCACAAGTGGATTTGTGGGTGCAGAAGTAGCTGATGATGGTGAAAGGGATGAAGATTGTGAAAGTGTTATGGCAAAAGATCCGGAGATTGATGATTTAGGAGCTCAAACAAATACAAAAAAGGAGGTCTCAAATTTTAAGGAATTTAATGCAAACACTGTCATGAGAAGTGGGAAGGACAATGGTGAGATTTTGCAAACTCGTGATAGTTGCCGTGAAAAAGTGGATGAGGGTTTAGGATTAATTGTTGTTGAAAGCTTTGACGGACGTAAAGATGTTCGTACGTCTAGTGAAATTGCTGTTTGCAGCAACGACATTGCTAATCCTATTCTAAAAAGTATGGATGTTGATGAAAACACTCTTGGTGAACCATGGGTGCAAGGGCTTACCGAGGGAGAGTACTCGGATCTTAGTGTGGAGGAGCGTCTTCACGCTCTTGTTGCTTTGATAACTGTGACAAACGAAGGAAATTCTATCCGTGTTGCGCTTGAGGAACGTTTAGAAGCGGCAAATGCTTTAAAGAAACAGATGTTGGCTGAGGCACAGCTTGATAAACGCCATATTAAAGAGGATAGTTTTGTTAAAATGCAGTCTTTCTCATATTTGGGAAACAAGAATGAACCAGCTGTTACATTTCCATCATTGGGGGGAAAGCAGTGCCCATCGCATACAGTTGATGTCAAAAATGATAAGGCTTTACTCACTCCCTGTGGCCAGCGTGAACAGATAGCACTACAGGAAAATCAAAATCCTTCGCAGAATTCCTTATTAGAAGTGAACATGCAAAGTCAAGATTGTTCTACTGGCCCAGATAATTATTCAATCCAACAATCTATATATGCTGCCGAAAAAGCAAGGTCAAATTTAAAATCATATATTGATCACTTGGCGGAACAAACTTACATGTATAGATCATTGCCTCTTGGTTTGGATCGAAGACGAAACCGATACTGGCAATTTGTTACTTCTGCTTCTCAAAATGATCCAGGTGCTGGTAGGATTTTTGTGGAATTACATGACGGCTGTTGGAAGCTGATTGATTCTGTAGAGGGTTTTGATGCTCTTTTGGTATCATTGGACTTGCGGGGGATCCGAGAGTCTCACTTACATATGATGTTGCAAAGAATTGAGACGTCCTTCAAAGAATCTGTTAGAAGAAATGTCCAAAATGGTGAGATGATAATGCAAAAAGGAGACACTGTCAAGAATCTCAAGAAAGAAGCAGTTAAAATGGCTGCAGACCTAGATTGCAGTGCTGATATTAACTGTCCTACTTCTGTCTGCATTGATGATTTGGACACATCAGTGGCGTCAACATCTTTTACAATTCAGCTTGGACGAAATGAAATCGAGAACAAAGATGCTTATATGAAATATTGGGACTTTGAGAAATGGATGCGAAAGGAATGTCTAAATTGCTCAGTATCATCTGCAATGAAGTATGGGAAGAAGAGGTGTAAGCAACTACTTCTCATATGTGATTTGTGCGGTCATGTCTATTTCTTTAGAGAAGTGCAATGTCCTTTGTGCCATAGAATTTTCAGTACTAGTCAGGGGAACTCTAGTTCTTATGAACATATTGCTCAATCTGAAGGCAAGATGAATATTGACGCAGATTTTTTTCACGATTCATCCTCTTCTTCAACGAGGATGAGATTACTCAAAATCCTTTTGTCAGTAGTTGAGGTAACCCTTCCCCAAGAAGCTCTGCAACCTTTTTGGACAGAGAGGTACAGAAAGTCTTGGAGTTCAAATCTGGAAGCTTCCTCATCAACGGAAGACATTCTTCAGATGTTGACTGCATTGGAAGGTGCTATAAAACGGGAGTATCTGGCTTCAGACTATGAAACTACGAATGAGCTGTTAGATTCTGTTTGCTCTTCTGGATGTCTCCCTAATGATATCATAGGTGGTGAAAAGATACCTGTTCTTCCATGGGTGCCATTTACAACTGCTGCTGTGGCTCTAAGGCTCATGGACCTCGATGCATGCATCTTTTACACCTCACAGCAGAAGCAAGAGACCAAGAAGGATAGTAAAACTGGAATTGTTGTCAAGCTTCCATTAAAATGTGCTGCTGCCAAAAATTCCTGCGATGGTGGTGCGATTGAAACTTCATTTCAGACTAAGCATACCGTAAAGAACTGGGGTGCTCTTGGTGCTGGCCTTGAGAGCTACAACAAAGGACAAAGGACTCGACAAGGCTGCAGCCATTCTCGTGGTCAAAGATCACAAGGAATAGTTACTAGTTCGAGATCCAATTCCAAAAAGAGGAGCACTACATCTAACAGCAGGAAAGAAGGAAGATTACTTGGATGGAAAGGCACACCAAACGGACAAGGACACACTCGTGGTCGGAGGAGTATCAGAAGCAGGAAGAAACCTGCAGCCAAGATGGATGTGATCACTAGTGAAAGGGGTACCCCAAAAGATATCACGGAGTTAACAGCAATCTCTGCGAGAGAAGAGATTGATGGTGGAACAGAAGCCAATGCTCTAAATGCTAGAAATTCGGAGAGATCTGAATATGAAGATGATGTTTGTCAGGCAACAAGAGATAAGTATGATTTTGTGGTGGATAATAATAATAATAATGGTAGATATCAAGGTGGATTCAGTGGGAACCCTGATAACTTAATAGAACAGAACCACTATAATGTGGATGATGAGGAAGACGTGGATATGGATGACAGTGTCAATAATGATGGAAAATATGGGCAAGTTGAACTTAATGTGGAAGATTATATAATTGGAGGAGACTCAGATGAAGAGTACAACAAAGAAGAAAATGAGGATCCGGATAGAGTTGGTTCAACCTCATCAGGTTACAGTGATTAA 5214 0.4198 MEACSEGHENKNKPLEEENRVKRKKKTPSQLEILEKTYAMETYPSEATRGELAVKLGLSDRQLQMWFCHRRQKDRKAVAPAGPSSVPMRDGVVKIEVTDVRNVSDFVSDLRPIGGMDLLGVVPLHEVMGFRRMGAALSEMDSSSSHEPHQTLHELQAIAFVESQLGESLRDDGPILGMEFDSVPLGAFGAPLEAVAVGQCRQPELSVEAKVYESLDKGVSKILHEYQFIPEQPTVKNEISERVTTAIHFSSLGGVPHSRTSLSSGAYFLNGNESAHNVYGVQGGNDDVPRMNPFVDVTLETQMRAHQVTPKDGGLVPFDSRVIHEEEFSRFQRKRKNEEARMQRELEVQEKRIRKELVKQEILRQKREEQIKKEMERHDRERQKEEERLLRERQREEERFLREQRREQEQREKFLQKESIRIEKLRQKEELQRVKEAARIKAASERAVARRMVKDAMDLIEDERLELMELAASKKGLSSILALDYETMQNLESYRDGQTSFPPKSVQLKRAFSIQPWSDSDENVGNLLMVWRFLITFADILGIWPFTLDELIQAFHDYDPRILGEIHIALLRSIIKDIEDVARTPTTGLGGNQNSYTNSGGGHPQVVEGAYVWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQLKKHNIEQVHPSNNEVNDGKDIISNLRSGAAVENAVAIMQEKGLSNPRRHKHRLTPGTVKYAAFYVLALEGNRGLNILEIADKIQKSGLRDLTTSKSPEAAIASALSRDTELFERTAPSTYCVRPVYRKDPADSEAIFSAARERIRIFTSGFVGAEVADDGERDEDCESVMAKDPEIDDLGAQTNTKKEVSNFKEFNANTVMRSGKDNGEILQTRDSCREKVDEGLGLIVVESFDGRKDVRTSSEIAVCSNDIANPILKSMDVDENTLGEPWVQGLTEGEYSDLSVEERLHALVALITVTNEGNSIRVALEERLEAANALKKQMLAEAQLDKRHIKEDSFVKMQSFSYLGNKNEPAVTFPSLGGKQCPSHTVDVKNDKALLTPCGQREQIALQENQNPSQNSLLEVNMQSQDCSTGPDNYSIQQSIYAAEKARSNLKSYIDHLAEQTYMYRSLPLGLDRRRNRYWQFVTSASQNDPGAGRIFVELHDGCWKLIDSVEGFDALLVSLDLRGIRESHLHMMLQRIETSFKESVRRNVQNGEMIMQKGDTVKNLKKEAVKMAADLDCSADINCPTSVCIDDLDTSVASTSFTIQLGRNEIENKDAYMKYWDFEKWMRKECLNCSVSSAMKYGKKRCKQLLLICDLCGHVYFFREVQCPLCHRIFSTSQGNSSSYEHIAQSEGKMNIDADFFHDSSSSSTRMRLLKILLSVVEVTLPQEALQPFWTERYRKSWSSNLEASSSTEDILQMLTALEGAIKREYLASDYETTNELLDSVCSSGCLPNDIIGGEKIPVLPWVPFTTAAVALRLMDLDACIFYTSQQKQETKKDSKTGIVVKLPLKCAAAKNSCDGGAIETSFQTKHTVKNWGALGAGLESYNKGQRTRQGCSHSRGQRSQGIVTSSRSNSKKRSTTSNSRKEGRLLGWKGTPNGQGHTRGRRSIRSRKKPAAKMDVITSERGTPKDITELTAISAREEIDGGTEANALNARNSERSEYEDDVCQATRDKYDFVVDNNNNNGRYQGGFSGNPDNLIEQNHYNVDDEEDVDMDDSVNNDGKYGQVELNVEDYIIGGDSDEEYNKEENEDPDRVGSTSSGYSD* 1738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2488 1737 MobiDBLite consensus disorder prediction 1521 1550 - -
Mtr4g2488 1737 SUPERFAMILY Homeodomain-like 17 76 IPR009057 -
Mtr4g2488 1737 Pfam HB1, ASXL, restriction endonuclease HTH domain 702 769 IPR007759 GO:0006355
Mtr4g2488 1737 MobiDBLite consensus disorder prediction 1683 1737 - -
Mtr4g2488 1737 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1096 1168 IPR028941 -
Mtr4g2488 1737 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Mtr4g2488 1737 Gene3D - 11 84 - -
Mtr4g2488 1737 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1737 IPR044977 GO:0006357
Mtr4g2488 1737 MobiDBLite consensus disorder prediction 1 28 - -
Mtr4g2488 1737 CDD homeodomain 20 76 IPR001356 GO:0003677
Mtr4g2488 1737 SMART testlast3 521 580 IPR018501 -
Mtr4g2488 1737 Pfam DDT domain 522 577 IPR018501 -
Mtr4g2488 1737 Pfam Homeodomain 21 76 IPR001356 GO:0003677
Mtr4g2488 1737 Coils Coil 952 972 - -
Mtr4g2488 1737 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1737 - -
Mtr4g2488 1737 SMART HOX_1 19 81 IPR001356 GO:0003677
Mtr4g2488 1737 ProSiteProfiles DDT domain profile. 521 580 IPR018501 -
Mtr4g2488 1737 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 915 953 IPR028942 -
Mtr4g2488 1737 ProSiteProfiles HARE-type HTH domain profile. 702 771 IPR007759 GO:0006355
Mtr4g2488 1737 Coils Coil 348 437 - -
Mtr4g2488 1737 MobiDBLite consensus disorder prediction 1521 1591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2488 Mtr-Chr4 38439565 38455393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2488 18 1735 Homeobox Transcription Factor Family AT5G44180 44.705 0.0 1278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mtr4g2488 WSD 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2488 - - gmx:100797480 2128.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2488 4 38439565 38455393 Mtr4g2488 4 38439565 38455393 ECH