Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2485 ATGCTTGCAGTACTGTCACCATTGAGGAACACTACCAAAGATGGAAGCCAAGAAGAGATGGAGAGTTTTTCAATGGGGAGTACTACAATTACAACTGGTGACTTTGGCGACCTTTCCGAAGGAAATTTATTGGAAAGCATCAACTTCGACGACTTCTTTGTTGGCATCAACGTGGATGGAGACATCTTGCCGGATTTGGAGATGGATCCAGAGATGTTTGCTGAGTTCTCCGTTAGCGCTAACGGCGAGGAATCAGAGATGAATTCGTCGGCGTCATTGGAGAACAACAGCAAAGTAGAAGAGAAGAATTCAAAGAAAGATTATGAGGATAAAACAAGTTGTTCGGGTCAAGGCTCGGAAGAGATAGCGAGTAAAAGAGATGAATCTGTGGTTGTGAATCCATTGTTAAAAGATGCAGGTGGAAAAGGAAGGAAATCATCGAGTAAATCTAAGTATCCTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACACCAGAATTGCATAGGAGATTTGTGCAAGCTGTGGAACAACTAGGGGTGGATAAGGCGGTGCCTTCAAGGATTTTAGAGATTATGGGAATTGATAGTCTCACTCGTCATAACATTGCAAGTCACCTTCAGAAATATAGGTCACATAGAAAACATTTGCTAGCACGTGAAGCAGAAGCAGCAAGTTGGAATCAAAGGAGACAAGTATATGGTGGTCTAGGGGTGAAAAGAGAAGTGATCAGTCCATGGCCAGCTGCACCCACCATGGCTTTCCCCCCTCATCCTCCTCCTCCTCCTCCTATGGTACCATTGCACCATTTTAGACCCTTACATGTATGGGGACATCCTTCAAATATGGACCAGTCTTTTATGCACATGTGGCCTACGCTGCAACCGCTGTCATGGACACCATCGCCAGATCCTCCACCACCTCAAGACCCTTCATTTTGGCATGCTCACCACCAACAGACTCCAACAACCGCAATAATCCGGGCAGGAACACATTGTTTCCCACCACCTCTGACAACAGTGAGACCATCATTTGGATGTCCAATCCCCGGCCATGGCATGTGTAAAGCAGATCACGGCATTAGCACCCCTCCTGCTCCCGGTCACTTCTTCGACTTACAACCGTCAAAGGAGAGCATAGACGCAGCTATTGGAGATGTTATATCAAAACCATGGTTACCACTACCACTTGGACTCAAAGCTCCAGCACTTGATAGCGTAATGGGTGAACTACAAAGACAAGGAATTTCAAACATACCACCCTCATCATGCACTTGA 1275 0.4588 MLAVLSPLRNTTKDGSQEEMESFSMGSTTITTGDFGDLSEGNLLESINFDDFFVGINVDGDILPDLEMDPEMFAEFSVSANGEESEMNSSASLENNSKVEEKNSKKDYEDKTSCSGQGSEEIASKRDESVVVNPLLKDAGGKGRKSSSKSKYPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDSLTRHNIASHLQKYRSHRKHLLAREAEAASWNQRRQVYGGLGVKREVISPWPAAPTMAFPPHPPPPPPMVPLHHFRPLHVWGHPSNMDQSFMHMWPTLQPLSWTPSPDPPPPQDPSFWHAHHQQTPTTAIIRAGTHCFPPPLTTVRPSFGCPIPGHGMCKADHGISTPPAPGHFFDLQPSKESIDAAIGDVISKPWLPLPLGLKAPALDSVMGELQRQGISNIPPSSCT* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2485 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 214 IPR017930 -
Mtr4g2485 424 MobiDBLite consensus disorder prediction 1 30 - -
Mtr4g2485 424 Pfam Myb-like DNA-binding domain 161 210 IPR001005 -
Mtr4g2485 424 Gene3D - 155 216 - -
Mtr4g2485 424 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 158 212 IPR006447 GO:0003677
Mtr4g2485 424 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 422 IPR044825 GO:0003700|GO:0045893
Mtr4g2485 424 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 422 - -
Mtr4g2485 424 MobiDBLite consensus disorder prediction 98 114 - -
Mtr4g2485 424 MobiDBLite consensus disorder prediction 81 97 - -
Mtr4g2485 424 MobiDBLite consensus disorder prediction 80 157 - -
Mtr4g2485 424 MobiDBLite consensus disorder prediction 9 30 - -
Mtr4g2485 424 SUPERFAMILY Homeodomain-like 156 215 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2485 Mtr-Chr4 38419574 38424734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2485 14 280 G2-like Transcription Factor Family AT5G44190 45.926 2.76e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr4g2485 Myb_DNA-binding 4.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2485 - - jre:109001455 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2485 4 38419574 38424734 Mtr4g2485 4 38419574 38424734 ECH