Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2478 ATGGTTACCAAAACAAAGAACGCCGCGAATCTCAAAATCAAGAAACCTTCCAACAACAACAACAATGCAACCGAGATTCACTTTCGCGGCGTAAGAAAGCGACCATGGGGCCGTTACGCCGCCGAGATTCGCGATCCCGGTAAGAAAAGCCGCGTCTGGCTAGGTACCTTTGACACCGCCGAAGAAGCTGCCAGAGCTTACGACAACGCCGCTCGTCAGTTCCGTGGCCCAAAAGCCAAAACCAACTTCCCTCCTCCTCCTTCCGATGTCAAAGAAGATAGCCCTAGCCAAAGCAGCACCGTTGAATCATCTGTCCCTGCTCCTGACCGTGAGGTCACGCGCCGAGAAGTTCCCACCGGCGGTAGCGTCATGGATCGGTTCCCTTTTCTCTCGATTCAGCAACAGATCATGCCGTTTGCTGGTGCTGGTGCCGGTGCTGTTGATGGAATGGTGCCAGTTTTCTTTTACGATCCAGCGGGTCGAGCTGAGTTTTTGAACCAGCGGTTTACTAACAGGTTTGAACCGGAACCGGTTCAGTTTAACATCGGGTTTGGAGGTGGGGTCCAGAGTGATTCGGATTCGTCCTCTGTTGTTGATTGTCAGCCGAAGAGAGCTCTCAATCTTGATCTTAACTTAGCTCCACCAATGGAATATTAA 657 0.5175 MVTKTKNAANLKIKKPSNNNNNATEIHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDNAARQFRGPKAKTNFPPPPSDVKEDSPSQSSTVESSVPAPDREVTRREVPTGGSVMDRFPFLSIQQQIMPFAGAGAGAVDGMVPVFFYDPAGRAEFLNQRFTNRFEPEPVQFNIGFGGGVQSDSDSSSVVDCQPKRALNLDLNLAPPMEY* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2478 218 MobiDBLite consensus disorder prediction 1 24 - -
Mtr4g2478 218 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Mtr4g2478 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 207 - -
Mtr4g2478 218 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Mtr4g2478 218 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Mtr4g2478 218 SUPERFAMILY DNA-binding domain 27 84 IPR016177 GO:0003677
Mtr4g2478 218 MobiDBLite consensus disorder prediction 71 119 - -
Mtr4g2478 218 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Mtr4g2478 218 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Mtr4g2478 218 PANTHER ERF FAMILY PROTEIN 16 207 - -
Mtr4g2478 218 MobiDBLite consensus disorder prediction 92 106 - -
Mtr4g2478 218 CDD AP2 27 84 IPR001471 GO:0003700|GO:0006355
Mtr4g2478 218 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2478 Mtr-Chr4 38368290 38369293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2478 25 216 AP2-EREBP Transcription Factor Family AT5G44210 48.731 4.97e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g2478 AP2 4.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2478 K09286 - gmx:100801924 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2478 4 38368290 38369293 Mtr2g2601 2 38974407 38975503 ECH
Mtr4g2478 4 38368290 38369293 Mtr4g2478 4 38368290 38369293 ECH
Mtr4g2478 4 38368290 38369293 Mtr2g0404 2 4086213 4087258 ECH