Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2476 ATGAGTAGTGTACTTTGTCAAGATCAACAAAAGCTTCTCCTTTCTCTCAAAAAGTCTCTCACTCTAAGGGACACTATCATGGACAACATCCCACCTAGGAAGCTACTCACCCGCCGCTCACCTACCACCACCGCCGTCACTGACATGTTTTCCGACGAGGATCCTTTTTCCTCCGACCACTTCCGAATGTACGAGTTCAAAATCCGGCGATGCACCCGTAGCCGGAGCCACGACTGGACTGACTGCCCTTTCGCCCATCCAGGCGAAAAGGCACGCCGTCGTGACCCCCTCAGGTATCAGTACTCCGGTGAGGTGTGTCCTGATTACCGCCGCGGAAACTGCGACCGCGGTGAAGCCTGTGAATTCTCCCACGGAGTTTTTGAGTGCTGGTTGCACCCTTCAAGGTATAGAACTGAAGCTTGTAAAGATGGTAAAAATTGTAAGCGAAAAATTTGTTTTTTTGCTCATACACCTCGTCAACTTAGAGTTTTGCTTTTACCACCCCTTTCTCCTTCTCCTACACCTCCTCAAAAAAACAACAAAAAATGTTGTTCTTTCTGTCATTGCTGTTCAAATTCTTCTTCACCCACTTCTACTTTGTTAAGTGGGCCCCATTTTTCTTCTTCAAATTCACCACCTTTGTCACCTTTGTCCAATTCAAATTCCAAAGATGTGCATGTGCTTAATGAGCTTATTCGTTCTATGGAGAGTTTTAATTTTGGTGATGATATTGTTCATGAGGCTAATTCACCTGTTTCTGCTAGCAAATTGAATTGGATTAATAATAATAATAATAATCCTAATTCTGTTGCTAATTCTTCATTGGGTTGTGGAAAATATTATAATTCAAGTGGTGGTGGTAGTGGCATGTTTTTGAGAGATGAACAAAGGATTAAGGTTGTTGATAATGATGTCACACCAGATTTTGGTTGGGTGAATGAGCTGCTGATGTAG 954 0.4319 MSSVLCQDQQKLLLSLKKSLTLRDTIMDNIPPRKLLTRRSPTTTAVTDMFSDEDPFSSDHFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPLRYQYSGEVCPDYRRGNCDRGEACEFSHGVFECWLHPSRYRTEACKDGKNCKRKICFFAHTPRQLRVLLLPPLSPSPTPPQKNNKKCCSFCHCCSNSSSPTSTLLSGPHFSSSNSPPLSPLSNSNSKDVHVLNELIRSMESFNFGDDIVHEANSPVSASKLNWINNNNNNPNSVANSSLGCGKYYNSSGGGSGMFLRDEQRIKVVDNDVTPDFGWVNELLM* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2476 317 SMART c3hfinal6 100 126 IPR000571 GO:0046872
Mtr4g2476 317 SMART c3hfinal6 135 158 IPR000571 GO:0046872
Mtr4g2476 317 Gene3D - 99 164 - -
Mtr4g2476 317 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 47 316 - -
Mtr4g2476 317 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 104 125 IPR000571 GO:0046872
Mtr4g2476 317 ProSiteProfiles Zinc finger C3H1-type profile. 100 127 IPR000571 GO:0046872
Mtr4g2476 317 PANTHER UNKEMPT FAMILY MEMBER 47 316 IPR045234 -
Mtr4g2476 317 MobiDBLite consensus disorder prediction 201 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2476 Mtr-Chr4 38341379 38342732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2476 52 262 C2H2 Transcription Factor Family AT5G07500 39.815 4.80e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr4g2476 zf-CCCH 5.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2476 K23047 - gmx:100820375 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2476 4 38341379 38342732 Mtr4g2476 4 38341379 38342732 ECH