Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2472 ATGGCCACCACGCTCCTCCGCAACTCCCCCACTTTCACAACAGCCATTGACGATCCTCTCTTACCCTTTCTCCGGTCAATCAAAAAAGCTCTAGAAGATTCCACCACTTCCTCCACTCAAAATCTCAGCAAGTTACTCAGAGATTGCATCAATAAATTCAAGAACAATCACAGCTACCGAAATGATCCCAGATTTCTCAAGATCTGGTTCCTATATATGGATGTTAGTGCTGATTTTGACAGTGTCTTCAAAGGAATGCTGAATAGTAATATATGTGCCAACGATGCTTCACTTTATGTGTATTCTGCATGTTTTTTTGAAGCAAAGGGTAGATTGCTCGATGCCGACACCATCTACAAGCTCGGCATTTCCAAAAATGCAGAGCCAATTAAATGGTTGGAGAAGGCACATACCTTATTTCTCAGTAGAGTTTCTGAAATATGCAATGTTGCTTCAAGCCAGAAGGTTGATTATAAAGAATCTGCTACGTTGGAAAATAATGACATTAATCCATGGGATGCCTCTACTCTGAATGACCTTTTGAAGAAGATAAATCCTTTAATTACGAAATTTGACGGGTACCATTCGAGCACTAAATCTTATACAGGAAAAATTGCCTTATCCACTTTGAAGAATGCATCAAGGAATAAAGTTATAGAGATAGGTGGAATTAAGTACCATATCAAGGGCTGTGCTGGACAGGGAGGTTTTGCTCAAGTATACAAGGCAAATGTCGACAGTGATCCGGATGATGTTGTGGCACTAAAGATACAAAAACCAGCTTTCCCTTGGGAGTTTTACATGTATCGTCAACTTGATCAGCGCATCTCTGACAGAGAAAGGTCAAACTATGGTTCTGCTCATAGAATTCATCTCTATTCTGATTGTAGCATACTCGTCTGTAATTATTTAGCTCATGGGACACTACAGGATGTCATCAACTCATATGTGGTCATAGGAAAATTCATGGAAGAAGTATTGTGCATTTATTACACAATAGAAATGTTGCACATGATTGAAACTTTGCATGATGTTGGTTTGATTCATGGTGATTTCAAGCCAGATAATCTGCTTATTCGTTATGCTAGGGGTAACCTCACTGAAGATGGGTTATTAGACCGAAGCGGTTGTTGGCATGATCAGGGTCTTTGTCTTGTTGACTGGGGAAGAGGGATCGATCTTAATCTCTTTCCAGATCACACGGTATTTAAGGGAGATTGCAGGACTTCTGGTTTTCGATGCATTGAGATGCAGGAGGATCGGCCGTGGAAATTTCAGGCAGATGCATATGGCCTTTGTGGTGTTGTCCATACAATGCTGCATAATACCTATATGGAAACCGTTAAAAAAGAATCATCTGATGGGGGTTCTGTGTATCTTCCCAGACTACCCTTTAAACGTTACTGGAACGTCGAGCTCTGGAAGACTTTCTTCACTAAGATGCTTAATGACTACCCTGGCCATGATGATAGGAAGTTGTTGCAGGAATTGAAGAAGTCCTTCCAAGACTATATCAGCTCCGATCCTCAACATATAAAGAAACTCAAGGAGTTACTCGCGAAGCAAAGGGTTTCTCTGTGTTCTGCATAG 1590 0.4088 MATTLLRNSPTFTTAIDDPLLPFLRSIKKALEDSTTSSTQNLSKLLRDCINKFKNNHSYRNDPRFLKIWFLYMDVSADFDSVFKGMLNSNICANDASLYVYSACFFEAKGRLLDADTIYKLGISKNAEPIKWLEKAHTLFLSRVSEICNVASSQKVDYKESATLENNDINPWDASTLNDLLKKINPLITKFDGYHSSTKSYTGKIALSTLKNASRNKVIEIGGIKYHIKGCAGQGGFAQVYKANVDSDPDDVVALKIQKPAFPWEFYMYRQLDQRISDRERSNYGSAHRIHLYSDCSILVCNYLAHGTLQDVINSYVVIGKFMEEVLCIYYTIEMLHMIETLHDVGLIHGDFKPDNLLIRYARGNLTEDGLLDRSGCWHDQGLCLVDWGRGIDLNLFPDHTVFKGDCRTSGFRCIEMQEDRPWKFQADAYGLCGVVHTMLHNTYMETVKKESSDGGSVYLPRLPFKRYWNVELWKTFFTKMLNDYPGHDDRKLLQELKKSFQDYISSDPQHIKKLKELLAKQRVSLCSA* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2472 529 ProSiteProfiles Protein kinase domain profile. 226 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g2472 529 Gene3D Transferase(Phosphotransferase) domain 1 224 526 - -
Mtr4g2472 529 SMART mad3_bub1_i 5 123 IPR013212 -
Mtr4g2472 529 SMART serkin_6 226 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g2472 529 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 16 145 IPR015661 GO:0007094
Mtr4g2472 529 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 150 528 IPR015661 GO:0007094
Mtr4g2472 529 Pfam Mad3/BUB1 homology region 1 15 123 IPR013212 -
Mtr4g2472 529 PANTHER BUB1 KINASE, ISOFORM A-RELATED 16 145 - -
Mtr4g2472 529 PANTHER BUB1 KINASE, ISOFORM A-RELATED 150 528 - -
Mtr4g2472 529 Pfam Protein kinase domain 227 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g2472 529 Gene3D - 11 160 - -
Mtr4g2472 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 347 359 IPR008271 GO:0004672|GO:0006468
Mtr4g2472 529 ProSiteProfiles BUB1 N-terminal domain profile. 1 161 IPR013212 -
Mtr4g2472 529 SUPERFAMILY Protein kinase-like (PK-like) 225 485 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2472 Mtr-Chr4 38305128 38312345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2472 225 445 CBL-interacting serine-threonine protein kinases AT2G26980 25.778 6.54e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Mtr4g2472 Pkinase 1.8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2472 K02178 - gmx:100783171 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2472 4 38305128 38312345 Mtr4g2472 4 38305128 38312345 ECH