Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2470 ATGGCTTCAACTTCATCTTCTCATTCCTTTACCACTTGTGTGTTATTCCTCTTTTTTCTATATTTGTCTTGTTTCTTCAACAACCTTGATGCAAAACACAGCATAACCAACACTCACAAGCACAAGCACCAACACAATCACAACCACATCCATAATTCCCCATTAAACCCAAGACTCTACCGCGCGTTTCTTGCACTGCAAGCATGGAAGCATGTGATCTACTCAGACCCAAAAAACATTACTTCAAATTGGGTAGGTCCTTCAGTTTGCAACTACACTGGTATCTACTGTGCTCCATCTCTTGATGATCCTAAAATAACAGTTGTAGCCGGCATTGACCTTAACCACGCAGACATAGCCGGGTTCCTACCCGACGAATTAGCCTTCCTATGTGATCTTTCACTTCTCCACCTCAATAGCAACCGTTTCTGTGGCATCATTCCGAAAACCTTCTCAAACCTAACTCATCTCTATGAGCTTGACCTTAGTAACAACAGATTTGTCGGACCTTTTCCTTCGGTCGTGCTTTCCCTTCCTTCCCTTACTTATCTCGACCTTCGTTACAATGAATTCGAAGGTCCGTTGCCTCCTGAGCTTTTCAACAAAGCTTTCGATGCTTTTTTCCTTAACAACAATCGCTTCACAAGTTCTATTCCAAGAAATTTAGGAAAAAGCAAAGCATCTGTTATGGTTTTTGCTAATAACAAATTTGGAGGATGTTTACCAGAAAGCATAGTGAACTTCGCCAACACTTTGGAAGAACTTCTCTTAATCAATACAAGCATCTCAGGTTGTCTTCCACAGCAAGTTGGATTTCTATACAAATTGAGAGTGTTGGATGTGAGTTTCAACAATATTGTTGGTCCTATACCTTATAGTCTTGCAGGGCTATCTCATTTGGAGCAGTTAAATTTAGGACATAATATGATGAGTGGAATAGTTCCTGTCGGAATTTGCGAGTTACCAAACTTAGTGAATTTCACTTTTTCTTACAACTTCTTCTGTGAGGAAGAGGGAATTTGTAAGAATTTGACATCAAAGAAGATAGCTTTTGATGATCGCCGCAATTGCTTGCCGGAGAAGGCACTGCAGAGGAGTGAAAAGGAATGTAGTGCAAAACTTGAACACCCTGTTGATTGCTTTGAGCTTTGTTGTGTTGAAGGAGGTCTTGGGAATAATGTTAGTGCTGGTTCTATGGCTATTCCACCTTCTGCAACTGCACCAGCAGCAATGCCTCTTTCTGCTGCACCTCTTGTTGCACCAAGCCATCCTTGA 1275 0.4133 MASTSSSHSFTTCVLFLFFLYLSCFFNNLDAKHSITNTHKHKHQHNHNHIHNSPLNPRLYRAFLALQAWKHVIYSDPKNITSNWVGPSVCNYTGIYCAPSLDDPKITVVAGIDLNHADIAGFLPDELAFLCDLSLLHLNSNRFCGIIPKTFSNLTHLYELDLSNNRFVGPFPSVVLSLPSLTYLDLRYNEFEGPLPPELFNKAFDAFFLNNNRFTSSIPRNLGKSKASVMVFANNKFGGCLPESIVNFANTLEELLLINTSISGCLPQQVGFLYKLRVLDVSFNNIVGPIPYSLAGLSHLEQLNLGHNMMSGIVPVGICELPNLVNFTFSYNFFCEEEGICKNLTSKKIAFDDRRNCLPEKALQRSEKECSAKLEHPVDCFELCCVEGGLGNNVSAGSMAIPPSATAPAAMPLSAAPLVAPSHP* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2470 424 PANTHER EXTENSIN-LIKE PROTEIN 1 423 - -
Mtr4g2470 424 SMART LRR_typ_2 178 202 IPR003591 -
Mtr4g2470 424 SMART LRR_typ_2 297 321 IPR003591 -
Mtr4g2470 424 SMART LRR_typ_2 273 296 IPR003591 -
Mtr4g2470 424 SMART LRR_typ_2 130 153 IPR003591 -
Mtr4g2470 424 Pfam Leucine rich repeat 275 332 IPR001611 GO:0005515
Mtr4g2470 424 Pfam Leucine rich repeat 133 190 IPR001611 GO:0005515
Mtr4g2470 424 Gene3D Ribonuclease Inhibitor 63 232 IPR032675 -
Mtr4g2470 424 SUPERFAMILY L domain-like 63 340 - -
Mtr4g2470 424 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 423 - -
Mtr4g2470 424 Gene3D Ribonuclease Inhibitor 233 360 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2470 Mtr-Chr4 38296846 38298495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2470 56 385 Leucine-rich Repeat extension Gene Families AT3G24480 56.798 1.03e-134 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2470 - - gmx:100802803 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2470 4 38296846 38298495 Mtr4g2470 4 38296846 38298495 ECH