Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2467 ATGTCGCTGCAAACTCTGAAGGAATTAACACTGAGACACTGCTCAACCCAACAATCATCATCACAATCCCTTCTCCGCGATTTCGATTCACACCTCCCAATCAACAGAAAACCCCAATCCTCTCTTGCCCATCACCTTCGTCTCCTTGATGACCCTGACGACCCACCTTTTCAGCCCCACGATTTCCTTTCCCAACAACAAGAATTAAAACTAGATGATGAAGAAGAAGAAGAGGAAGAGCCAGAGATAAAGTGTGTGCCTGTGAAATTTACTTCTGTTAAATCCTCTCAGATTCAATTCGATCATACTGGACCCTTTGAGCCTTTGCTTTTGTCTTCTGACGGTGAACTTCCTTTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAGAGAGTGGGAGTGAAGTTTCTGTATGATTTGTACAAGAATAATAAGGGAGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCCATATTTGGTAAAGAAGGAGACTCCATTCTTAGTGAGACGCGAGTTGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCCATTATTCAAAACTGGGAGAGTGAATTCTCTAAGTGGTCCAACTTCAGCGTTGCCATTTATCACGGCGCAAACCGGGATTTGATATATGATAAATTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTTGACACTTACAGGATTCACGGAAACAGTTCCTTGTCAGATATACAGTGGAACACTGTGATTATTGATGAGGCTCATCGGCTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTGCGACGATATGGTCTTACCGGGACCGTAATGCAAAATAAGATCTTAGAATTGTTCAATATCTTTGATTTAGTTGCACCTGGATCCCTTGGAACGCGTGAACACTTCCGTGAGTTTTATGATGAACCCCTTAAACATGGTCAGAGGTCAACTGCTCCTGATAGATTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTATCAGTTCTTAATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATAGGGCATCTTATGATGGGGAAGGAAGATAACATTGTTTTTTGTGCAATGAGTGATTTGCAAAAACGCATTTATAGGAGAATGATCCAGCTTCCTGACATTCAGTGCCTTATAAACAAGGACCTACCTTGTAGTTGTGGTAGCCCTCTCACTCAAGTTGAATGTTGCAAAAGGACTGTACCAGATGGAGCTATTTGGCCTTACCTTCACAAAGATAACCTCGATGATGGATGTGACTCATGCCCCTATTGTATTGTCCTTCCATGCCTTGTCAAGCTACAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAGTTAAAGATGCAAAGTTTGCTGCTGCTGTCTATGGCCCAGACATTGACTTAGTTGGTGGGAGCATGCAGAATGAGAGTTTCCTGGGTCTAAGTGATGCAGAACATTGTGGCAAAATGCGAGCACTTGAAAAGCTATTGTTGTCATGGTTTTCACATGGCGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTATCATAAGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCTAGTCCAAGCAAACAAGTGTTCCTGATATCAACTCGTGCTGGTGGGCTCGGATTGAACCTTGTCAGTGCGAACCGTGTCGTAATATTTGATCCCAACTGGAATCCCTCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGATATGGACAGAAACGGCATGTTGTGGTATTCCGTCTTCTCTCAGCTGGTTCACTTGAAGAACTAGTTTATTCTCGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTCTCTGGGAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGATTGCAAAGCATTTCAAGGGGAGCTTTTTGGAATCTGCAATTTATTTCGAGATTTATCTGATAAACTATTTACCAGTGAGATCGTTGAATCGCATGAGACGAATAAAAAAGACGGGCTTGAAACAGAACAGCAGAAAAAAACATATATTTCAGAAGAAACAAATTTGTTAGTATCAGAGTCGGAAACCAGGTCATGTTCTGAATCTGTGAGGACTACAAGTAAACCAGATATTGAATTTGAAGACGTCGGCATTGTCTACGCTCATCGCAATGAAGACATTGTCAACTCCCGACCAGTGATTCAAAGGCAGTTATCTACCAGCAGCACCTCTTCAAGCGACGGCCAAAGCGAGCCAAGCAGCACTTTAGTCCATGAAAGGAAGAAATCAGATTGTGTACCTAAAAAACAGAAAATTCTTTTGATCGATGAAAGGAAGAGAGCCCAATTTAGCCTGCTCGCTGAGAGTATGGGCATGGAAGACCTTGCATTTAGCAAATGGTTGCTATCCGCCACTCCAGTAGAGAGAGAAAAGGTGCTTATAGACTACAAAAGGAAAAAGCTTAAAGGTTGA 2616 0.4174 MSLQTLKELTLRHCSTQQSSSQSLLRDFDSHLPINRKPQSSLAHHLRLLDDPDDPPFQPHDFLSQQQELKLDDEEEEEEEPEIKCVPVKFTSVKSSQIQFDHTGPFEPLLLSSDGELPLVQVPASINCRLLEHQRVGVKFLYDLYKNNKGGILGDDMGLGKTIQTIAFLAAIFGKEGDSILSETRVEKRDPVLIICPSSIIQNWESEFSKWSNFSVAIYHGANRDLIYDKLEANGVEVLITSFDTYRIHGNSSLSDIQWNTVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKILELFNIFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVSVLNKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRIYRRMIQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPDGAIWPYLHKDNLDDGCDSCPYCIVLPCLVKLQQISNHLELIKPNPKDDPDKQVKDAKFAAAVYGPDIDLVGGSMQNESFLGLSDAEHCGKMRALEKLLLSWFSHGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKAFQGELFGICNLFRDLSDKLFTSEIVESHETNKKDGLETEQQKKTYISEETNLLVSESETRSCSESVRTTSKPDIEFEDVGIVYAHRNEDIVNSRPVIQRQLSTSSTSSSDGQSEPSSTLVHERKKSDCVPKKQKILLIDERKRAQFSLLAESMGMEDLAFSKWLLSATPVEREKVLIDYKRKKLKG* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2467 871 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 677 IPR001650 -
Mtr4g2467 871 MobiDBLite consensus disorder prediction 784 810 - -
Mtr4g2467 871 Gene3D - 376 749 IPR027417 -
Mtr4g2467 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 364 IPR027417 -
Mtr4g2467 871 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 314 IPR014001 -
Mtr4g2467 871 Gene3D - 110 363 IPR038718 -
Mtr4g2467 871 Pfam Helicase conserved C-terminal domain 521 633 IPR001650 -
Mtr4g2467 871 SMART helicmild6 550 633 IPR001650 -
Mtr4g2467 871 Pfam SNF2-related domain 147 404 IPR000330 GO:0005524|GO:0140658
Mtr4g2467 871 CDD SF2_C_SNF 518 644 - -
Mtr4g2467 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 685 IPR027417 -
Mtr4g2467 871 MobiDBLite consensus disorder prediction 784 801 - -
Mtr4g2467 871 PANTHER SNF2/RAD54 FAMILY MEMBER 56 809 - -
Mtr4g2467 871 SMART ultradead3 126 322 IPR014001 -
Mtr4g2467 871 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 56 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2467 Mtr-Chr4 38274756 38280847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2467 149 663 RAD5 or RAD16-like Gene Family AT1G02670 26.465 6.34e-35 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr4g2467 SNF2_N 1.8e-55 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2467 4 38274756 38280847 Mtr4g2467 4 38274756 38280847 ECH