Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2456 ATGGATCAATTTGGAAGTGATCAACCTTCTAGCTCTAATACAACCAAAGTTGAAAGAAGGCTCGTTGAAAAAAACAGAAGAAATCAGATGAAGATCCTCTACTCCAAACTCAACTCTCTTCTCCCTAACTATAATCCCAAGGAATTACCATTGGCGCTACCGGATCAAGTAGATGAGGCTATAAACTACATAAAGAGTTTAGAGGCAAATGTGCAGATGGCTATGGAGAAGAAAGAAAGGCTATTAGCAGGAAAGAATAAAAGATCACGTGAATATTGCTTAGATCTACCAAAATCACCATGTTTTGAAATTCACGAAATTGGTTCTTCACTACAAATCATTCTCACGTGTGGGTTAGATAACCAATTCATTTTCTATGAAATAATTCGTGTGTTACATGAAGAGAATGTAGACATAAGGAGTGTTAATTCCTCTAAGGTTGGAGATAATTCACTCCTTCATGTTGTTCATGCTGAGATTCCTCCATCTTGTGTTCAATTTGGAGCGACCAAAGTGAGTGAGAGATTGAAAAGTTTTGTGTATGGATCTTCCAGTGATGTGGAAATACAGCCTGAGTTGTGGGATTTTGAAATTGGACCTGATGATCATAATATGTGGGGTTTCTAG 627 0.3748 MDQFGSDQPSSSNTTKVERRLVEKNRRNQMKILYSKLNSLLPNYNPKELPLALPDQVDEAINYIKSLEANVQMAMEKKERLLAGKNKRSREYCLDLPKSPCFEIHEIGSSLQIILTCGLDNQFIFYEIIRVLHEENVDIRSVNSSKVGDNSLLHVVHAEIPPSCVQFGATKVSERLKSFVYGSSSDVEIQPELWDFEIGPDDHNMWGF* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2456 208 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
Mtr4g2456 208 SMART finulus 20 73 IPR011598 GO:0046983
Mtr4g2456 208 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 187 IPR015660 GO:0003700|GO:0006357
Mtr4g2456 208 Coils Coil 57 84 - -
Mtr4g2456 208 Gene3D - 6 95 IPR036638 GO:0046983
Mtr4g2456 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 67 IPR011598 GO:0046983
Mtr4g2456 208 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 10 187 - -
Mtr4g2456 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 83 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2456 Mtr-Chr4 38169571 38170700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2456 8 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.799 2.58e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g2456 HLH 2.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2456 - - gmx:100817883 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2456 4 38169571 38170700 Mtr4g2456 4 38169571 38170700 ECH
Mtr2g3102 2 44723136 44725540 Mtr4g2456 4 38169571 38170700 PCT