Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2437 ATGATGGGGAGAGCACCATGCTGTGATGAAAGTGGTTTGAAGAAGGGACCTTGGACACCAGAAGAGGACAGAATATTGGTGAATCACATTAAGAAACATGGCCATGGAAGTTGGAGAGCACTTCCAAAGCTAGCAGGATTGAACAGATGTGGGAAAAGTTGCAGACTAAGGTGGACTAACTATTTAAGACCTGATATCAAAAGAGGACAATTCACAGATGAAGAAGAGAAAACAATCATCAATTTGCATGCTGTTCTTGGGAATAAGTGGTCAGCTATAGCAGGTCATCTACCAGGAAGGACTGATAATGAAATAAAGAATTTTTGGAACACTCATTTAAAGAAAAAGCTTCTTCAAATGGGATTAGATCCGGTGACTCATCGTCCAAGAATTGATCATCTAAATCTTATGACAAATCTTCAACAGCTTCTTGCTGCAAATGTTCTCAATTATTTACCAAACACTTGGGACACTGCTACTACCAATGCTCTTAGGCTTCAATCTGATGCAACCAAATTCCAATTGCTTCAAAACATGGTTCAAATTCATGCCCTTAGTGCCAATATTCCTGCTCATACCTCAAACTTGCAATTACTCAATCCATTTGGACAATCTTCATCTTCATCACAGCAAGAAAATTTCTTCAATGAACTTTTAGGATTGAATCAGTCCAACTTTGCTTCTCAAAATCAGTGCAACTTTCAAAGCTTTCAAGTACCTCAGATGCAACAAGTTTTAAGCAATGGATATCAGTTTATGGATAATGGTGGCAGCAGCAACAGTAGTAGTTGCTTGAAGTCTGATCAAAAGGTTGATGAAGTATTTGATGCTACAAATTCTTCTTCGACGGTACCGATAAATTCGCTTCCAAATTTGGTTTCTGTTTCACCAGAATGTTCTAGTGTGAAAGAGATGATGGGAAACAAGGTGAACCAAAATGATTGTTCCAATCCTTCTTCAACCTCAACTACCTTTGAAATGTTGGGAGATTTCATGTATGAGGATGTTAGCGATGCTTACTGGAAAGATCTCTTAGACCAAGATCCTACCTTGCAACCATAA 1062 0.3851 MMGRAPCCDESGLKKGPWTPEEDRILVNHIKKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGQFTDEEEKTIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRIDHLNLMTNLQQLLAANVLNYLPNTWDTATTNALRLQSDATKFQLLQNMVQIHALSANIPAHTSNLQLLNPFGQSSSSSQQENFFNELLGLNQSNFASQNQCNFQSFQVPQMQQVLSNGYQFMDNGGSSNSSSCLKSDQKVDEVFDATNSSSTVPINSLPNLVSVSPECSSVKEMMGNKVNQNDCSNPSSTSTTFEMLGDFMYEDVSDAYWKDLLDQDPTLQP* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2437 353 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Mtr4g2437 353 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Mtr4g2437 353 SMART sant 67 115 IPR001005 -
Mtr4g2437 353 SMART sant 14 64 IPR001005 -
Mtr4g2437 353 CDD SANT 71 113 IPR001005 -
Mtr4g2437 353 PANTHER MYB TRANSCRIPTION FACTOR 4 348 - -
Mtr4g2437 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mtr4g2437 353 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mtr4g2437 353 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr4g2437 353 Gene3D - 12 68 - -
Mtr4g2437 353 Gene3D - 70 117 - -
Mtr4g2437 353 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 348 - -
Mtr4g2437 353 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Mtr4g2437 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Mtr4g2437 353 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2437 Mtr-Chr4 37983277 37985487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2437 2 346 MYB Transcription Factor Family AT5G16770 49.719 2.44e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g2437 Myb_DNA-binding 6.9e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2437 4 37983277 37985487 Mtr5g0144 5 1330605 1333540 ECH
Mtr4g2437 4 37983277 37985487 Mtr4g2437 4 37983277 37985487 ECH