Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2423 ATGGGAACAAGATCGCAGCAATCGTGTGTCGACGAAGATGAGGAGGAATTTATCGGTTGTGGAACTACGATTTCGGGACAATCAGGCTCAACCAGCAGGAGTGCCGGCGGGTTAGCGTCTAGCCGAAGCGAGCAGACGATTGGGACAGCCGCCGGTGATAACACTGCTCTCAGATTGAATCATCTTGATATACAGGATGATGATGCTGCTTCCCAAGGAGTAGTTGCTAGCAAGAAGAAAAAGAGAGGCCAACAACGAGCTACCGGAGGTGATAAAAGTGGAAGAGGGCTTCGCCAATTTAGCATGAAAGTGTGTGAGAAGGTAGAAAGTAAAGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTGCTGATCCAATCAACAGTGTTTTGACCCCCGATAAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATTCAATGGAAGGGTCTTCCTCGTACTAGTCTGAATGATATTGAAGAGCTAAAGACAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAGGAAATCATCCTATTTGCAGGAGCTAGAGGAACAATTTGTAGGTCTTCAGAACCTTGTTAAACGAAATGAACAATTATATAGCTCTGGAAATCCTCCCAGTGGAGGTGTATCTTTACCCTTTATTCTGGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTTAATAGTACTCCTTTTGAGTTGCATGATGACAATTATGTGCTCAAGGCAATGGAATTTGGTGATAGAACACAGAGTGATATTGTTACACACAATGTTACAGATGGAGGGGAAGGTTCTAGCATGTCAGGCATGCATCAGTCACAGGTTCCTCCTTCAGCTTCAAGCGTGTCAACTAGACCTCCAACATCACCTCCACTCCCTGGAATATTAAAAGCAAGAGTCAAACAAGAGCATTGA 1035 0.4319 MGTRSQQSCVDEDEEEFIGCGTTISGQSGSTSRSAGGLASSRSEQTIGTAAGDNTALRLNHLDIQDDDAASQGVVASKKKKRGQQRATGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINSVLTPDKQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIERKSSYLQELEEQFVGLQNLVKRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMEFGDRTQSDIVTHNVTDGGEGSSMSGMHQSQVPPSASSVSTRPPTSPPLPGILKARVKQEH* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2423 344 Pfam Transcription factor DP 183 297 IPR014889 -
Mtr4g2423 344 PIRSF Txn_factor_DP 2 344 IPR015648 GO:0005667|GO:0051726
Mtr4g2423 344 SUPERFAMILY "Winged helix" DNA-binding domain 95 176 IPR036390 -
Mtr4g2423 344 SMART DP_2 182 342 IPR014889 -
Mtr4g2423 344 PANTHER TRANSCRIPTION FACTOR DP 24 344 IPR015648 GO:0005667|GO:0051726
Mtr4g2423 344 MobiDBLite consensus disorder prediction 21 43 - -
Mtr4g2423 344 PANTHER DP TF 24 344 - -
Mtr4g2423 344 MobiDBLite consensus disorder prediction 70 96 - -
Mtr4g2423 344 CDD DP_DD 180 283 IPR014889 -
Mtr4g2423 344 Gene3D Transcription factor DP 181 311 IPR038168 -
Mtr4g2423 344 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667|GO:0006355
Mtr4g2423 344 MobiDBLite consensus disorder prediction 20 43 - -
Mtr4g2423 344 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667|GO:0006355
Mtr4g2423 344 SUPERFAMILY E2F-DP heterodimerization region 181 292 IPR037241 -
Mtr4g2423 344 Coils Coil 191 225 - -
Mtr4g2423 344 MobiDBLite consensus disorder prediction 296 322 - -
Mtr4g2423 344 MobiDBLite consensus disorder prediction 296 344 - -
Mtr4g2423 344 Gene3D - 87 180 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2423 Mtr-Chr4 37847106 37851324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2423 64 284 E2F-DP Transcription Factor Family AT5G02470 52.252 2.90e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mtr4g2423 DP 1.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2423 K04683 - qsu:112000390 514.998