Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2422 ATGGGAACTCAGCCGCATCAATCGTCTGTGGACGAAGAGGATGAGGAATTGATGGGTTGTGGAACTACGATTTCGGGACAATCAGGCTCAACCAGCAGGAGTGCCGGGTTACCGTCTAGCCGGAGTGAGCAGACCACGGGGACAGCCGCCGGTGATAACGCTGCTCTCAAATTGAATCATCTTGATATACAGGATGATGATGCTGCATCACAGGCAGTAGTTGCTACCAAGAAGAAAAAGCGACGGGCTGTTGGAGGTGATAAGAATGGAAGAGGGCTCCGGCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGTAAAGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTTCTGATCCAAGCAATGGTGGTTTGTCCCCTGATCAGCAACAATACGATGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTGAATGTTCTTATGGCTATGGATATTATTTCCAAGGATAAAAAAGAAATACAATGGAAGGGTCTTCCTCGTACCAGTCTGAGTGATATTGAAGAACTAAAGACACAGCGTCTTGGGCTCAGGAGTAGAATTGAAAGGAAAGCAGCCTATCTGCAGGAGCTTGAGCAGCAATTTGTAGGTCTTCAGAACCTTATCCAACGAAATGAACAATTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTCTGGTTCAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAATAGTTCTCCTTTCGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGGATTTTGGTGGGGGTGAGAGACCGCAGAGTGACAATGTTACACACAATATTGCGGATGGAGGGGAAGGTTCTAGCATGTCAGGCATGTATCAATCACAGGTTCCTCAGTCAGTTTCAAACATGTTAGTTAGGCCTCCGACATCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAGCATTGA 1029 0.449 MGTQPHQSSVDEEDEELMGCGTTISGQSGSTSRSAGLPSSRSEQTTGTAAGDNAALKLNHLDIQDDDAASQAVVATKKKKRRAVGGDKNGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNGGLSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEELKTQRLGLRSRIERKAAYLQELEQQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSSPFELHDDNYVLKAMDFGGGERPQSDNVTHNIADGGEGSSMSGMYQSQVPQSVSNMLVRPPTSPPLPGILKARVKQEH* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2422 342 PANTHER TRANSCRIPTION FACTOR DP 14 342 IPR015648 GO:0005667|GO:0051726
Mtr4g2422 342 MobiDBLite consensus disorder prediction 21 50 - -
Mtr4g2422 342 MobiDBLite consensus disorder prediction 323 342 - -
Mtr4g2422 342 SMART DP_2 178 340 IPR014889 -
Mtr4g2422 342 Pfam E2F/DP family winged-helix DNA-binding domain 91 171 IPR003316 GO:0005667|GO:0006355
Mtr4g2422 342 SMART E2F_TDP_2 88 171 IPR003316 GO:0005667|GO:0006355
Mtr4g2422 342 Gene3D Transcription factor DP 177 316 IPR038168 -
Mtr4g2422 342 MobiDBLite consensus disorder prediction 1 50 - -
Mtr4g2422 342 PIRSF Txn_factor_DP 2 342 IPR015648 GO:0005667|GO:0051726
Mtr4g2422 342 CDD DP_DD 176 279 IPR014889 -
Mtr4g2422 342 Gene3D - 79 176 IPR036388 -
Mtr4g2422 342 Pfam Transcription factor DP 179 287 IPR014889 -
Mtr4g2422 342 PANTHER TRANSCRIPTION FACTOR DP 14 342 - -
Mtr4g2422 342 SUPERFAMILY "Winged helix" DNA-binding domain 91 172 IPR036390 -
Mtr4g2422 342 Coils Coil 201 221 - -
Mtr4g2422 342 SUPERFAMILY E2F-DP heterodimerization region 178 285 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2422 Mtr-Chr4 37841564 37845159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2422 63 279 E2F-DP Transcription Factor Family AT5G02470 51.835 3.39e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mtr4g2422 DP 7.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2422 K04683 - jre:108988357 516.153