Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2415 ATGATGCGGTTGCAGACGTATGCAGGTCTTAGTTTAATTGCCACTTTGGCTATTACATATCATGCATTTAACAGCAGAAGCCAGTTTTATCCGGCAATGGTTTATTTAGCAACTTCCAAGATCAGTTTAGTGCTTCTTCTCAACATGGCTCTAGTCATCATGTGTGTTTTGTGGCAGTTAACTAAAAAGGTGTTTCTTGGTTCTCTTCGGGAGGCCGAGGTTGAGAGGCTTAATGAGCAAGCATGGAGGGAGGTTATGGAAATCCTCTTTGCAATTACTATCTTTAGACAGGATTTCTCTATTACATTCCTTGCCATGGTTACGGCACTCTTGTTAATCAAGGCCTTGCATTGGTTGGCTCAGAAGAGAGTAGAGTACATAGAGACTACACCTTCCGTGTCTGTGTTGTCTCAAGTTCGAATCGTATCTTTTTTGGGGTTCCTTCTTCTTCTTGATGGAGCGTTTTTGTACAGTTCAGTGAAGCATTTACTTGCAACCAAGCAGGCTTCGGTTTCGATCTTCTTTTCTTTTGAGTACATGATACTAGCAACAACAACAGTATCCATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGGCAATGGGAAAAGAAACCGGTCTTCACGTTTTACTTGGAACTTGTTAGGGACTTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTGGCAATCTTCATAAACTATGGTGTTCCTTTGCACTTAATAAGGGAGCTATACGAGACATTTAGGAACTTCAAAGTTCGTATTTCAGATTATCTACGTTATCGTAAGATCACTTCTAACATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATTCAAATGACTTAACCTGTATCATCTGTCGTGAAGAGATGACTACTGCAAAGAAACTTATATGCGGTCATCTTTTTCATGTTCATTGCCTCCGATCATGGCTAGAGCGGCAGCATACTTGCCCTACCTGCAGAGCACTGGTTGTCCCATCAGAAAATGGACCAACTGCTACTGGGGGACAACAAAGACCACAGTCAGATGCTAATCGACAAGGGGAAGGCACTGGAAGCTCAGCTCAAACTGAGGTTGGCGATGGGGTGGCTCGTGATAATTTGAGTCGGCATCAAGCAAGACTTCAAGCTGCAGCAGCTGCAGCTTCAATATACGAGAAGTCTTATGTTTACCCTTCTCCAACTTTTGCATGTTATCCCCCGATTCATAGATCAGTGGTTCAATCATCTAATAATGCTGAGCTTGATGGAGAACAAGTTTCCAGTGAGCAAGCACAAAAGCAGTTTGTGATCCCCGGTGGACCAATGAATGCGTCCTCTTCTCCAGTGCAAAGCTTCTACGTTCCACCATCTCAAACACATGCAGCCCACATGACTTATGGAGAGGGATCCCAGCTGGGAGCTCAAACAAAACTCCAGAACGAGAAAACAAATGTTGACAAAAGTGTAGGTGAGGACACGTCGTCAGTATCAGATAGCAGAGGCAAACACATGGCTGCCTCTTCATCTGTATCTGTATCAGGTCATGATGAGAGCCCTTGA 1569 0.4315 MMRLQTYAGLSLIATLAITYHAFNSRSQFYPAMVYLATSKISLVLLLNMALVIMCVLWQLTKKVFLGSLREAEVERLNEQAWREVMEILFAITIFRQDFSITFLAMVTALLLIKALHWLAQKRVEYIETTPSVSVLSQVRIVSFLGFLLLLDGAFLYSSVKHLLATKQASVSIFFSFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELVRDLLHLSMYMCFFLAIFINYGVPLHLIRELYETFRNFKVRISDYLRYRKITSNMNDRFPDATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTATGGQQRPQSDANRQGEGTGSSAQTEVGDGVARDNLSRHQARLQAAAAAASIYEKSYVYPSPTFACYPPIHRSVVQSSNNAELDGEQVSSEQAQKQFVIPGGPMNASSSPVQSFYVPPSQTHAAHMTYGEGSQLGAQTKLQNEKTNVDKSVGEDTSSVSDSRGKHMAASSSVSVSGHDESP* 523
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2415 522 Pfam Ring finger domain 291 330 IPR001841 -
Mtr4g2415 522 SUPERFAMILY RING/U-box 272 336 - -
Mtr4g2415 522 SMART ring_2 292 329 IPR001841 -
Mtr4g2415 522 MobiDBLite consensus disorder prediction 337 369 - -
Mtr4g2415 522 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Mtr4g2415 522 PANTHER - 1 437 - -
Mtr4g2415 522 MobiDBLite consensus disorder prediction 463 522 - -
Mtr4g2415 522 CDD RING-H2_synoviolin 289 330 - -
Mtr4g2415 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 338 IPR013083 -
Mtr4g2415 522 MobiDBLite consensus disorder prediction 339 369 - -
Mtr4g2415 522 PANTHER RING ZINC FINGER PROTEIN 1 437 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr4g2415 Mtr-Chr4 37754776 37761135 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2415 1 402 C3H Transcription Factor Family AT3G16090 76.238 0.0 643
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2415 4 37754776 37761135 Mtr4g2415 4 37754776 37761135 ECH