Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2378 ATGACAATGGCTATCATTCCTGATGCAGAGATGTTGCCAACAGTTGTTGGCATTGCCAAACTCTCAGAAGAAGAGAGACATGCAAATATTCATGAAGAGGACATTAATAGACTTACCAACATTGCTATCACACAATGCATTGGTGAAACTGATGCCAATTTAGATGCAGTAATTGCTCACTATGTGGAGACTATAAACAAATACAACTTGTGTAACTTAGGTTATCCCGGAAATCAAGACTTCAACTATGAAGCATTAGCACCGTTACTTCAATTTCTCTTGAACAATGCTGGAGATCCATTTCTTGGAAGCGGCTTTTCTCTCAATTCAATGACATTTGAAGTTAGTGTGCTTGATTGGTTTGCTAAACTATGGGAGATAGAGAAGGATCAGTACTGGGGATACGTCACAACTGGTGGAACGGAAGGGAATCTTCATGCGATTTTAGTAGCGAGAGAACAATTTCCAGATGGAATTCTATATACCTCACAAGATTCACATTATTCGATATTCAAAATTGCAAGAATGTATCGAATGCAATGTGTGAAGGTTGGCTCTTTATTATCAGGTGAAATTGATTGTGTTGAACTAGAGGCTTCTCTACTTTCCCACAAGGATAAACCAGCCATCATCAATCTAAACATAGGGACAACTTTGAAAGGTGGGATTGATGATCTTGATCTTGTAATACAAACACTAGACAAATGTGGTTTTACTCGTGATCAATTCTACATTCATTGTGATGGAGCTTTATTTGGAATCATGTTGCCTTTTATCCAACAAGCTCTAAGGATTAGCTTCAAGAAACCTATCGACAGTGTAACTATTTCAGGTCATAAGTTTTTGGGATGCCCATTTCCTTGTGGTGTTTTGATAACTCGTTTGAAATATATCAATGCACTATCTAGAGATGTTGAATATATTGCTTCAAGGGATGCTACAATCACAGGTAGCCGTAGTGGGCATGCTCCAATCTTTCTTTGGTATGCTCTCAAAAAAAGGGGTTTAATAGGACTCGAGAATGAAGTACATGAATGCATAACGAATGCACGTTACTTACTAAATCAACTACGTGATGCTGGAATTGGTGCAATGTTAAACGAGTTTAGCAACATAGTTGTTTTTGAGAGACCCTTTGATGATCACTTTACTCGTAGATGGAATTTAGCAAGCAATGGAAATATTGCACATGTGGTAGTGTTGAAGCACATTACTATTGAAATGCTTGACACCTTTGTTTGTGAATTTATCCAAAAACGATCGATTTGGTCTAAAGATGGACAATTTCAGCTTCCATGTATTGCAAGCGACGTTGGTTCTAGAAATTGTGCTTGTTCGATACACAGCTTATCAAGAAATTATTAG 1365 0.3758 MTMAIIPDAEMLPTVVGIAKLSEEERHANIHEEDINRLTNIAITQCIGETDANLDAVIAHYVETINKYNLCNLGYPGNQDFNYEALAPLLQFLLNNAGDPFLGSGFSLNSMTFEVSVLDWFAKLWEIEKDQYWGYVTTGGTEGNLHAILVAREQFPDGILYTSQDSHYSIFKIARMYRMQCVKVGSLLSGEIDCVELEASLLSHKDKPAIINLNIGTTLKGGIDDLDLVIQTLDKCGFTRDQFYIHCDGALFGIMLPFIQQALRISFKKPIDSVTISGHKFLGCPFPCGVLITRLKYINALSRDVEYIASRDATITGSRSGHAPIFLWYALKKRGLIGLENEVHECITNARYLLNQLRDAGIGAMLNEFSNIVVFERPFDDHFTRRWNLASNGNIAHVVVLKHITIEMLDTFVCEFIQKRSIWSKDGQFQLPCIASDVGSRNCACSIHSLSRNY* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2378 454 Pfam Pyridoxal-dependent decarboxylase conserved domain 111 362 IPR002129 GO:0016830|GO:0019752|GO:0030170
Mtr4g2378 454 Gene3D Aspartate Aminotransferase, domain 1 333 420 IPR015422 GO:0003824
Mtr4g2378 454 PANTHER - 22 448 - -
Mtr4g2378 454 Coils Coil 21 41 - -
Mtr4g2378 454 Gene3D - 89 332 IPR015421 GO:0003824
Mtr4g2378 454 SUPERFAMILY PLP-dependent transferases 57 416 IPR015424 -
Mtr4g2378 454 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 273 294 IPR021115 GO:0016831
Mtr4g2378 454 PANTHER SERINE DECARBOXYLASE 22 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2378 Mtr-Chr4 37328986 37334442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2378 215 349 Calmodulin-binding Proteins AT1G65960 27.778 6.22e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2378 K25193 - gmx:100781665 674.47