Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2358 ATGGAATTCGTCGGAAAAACCATTCAGAAATCGGTGGACGATGGTGGAATTCTCACCGGAACTGTCAAATCTCACAATTCTTCGTCGGGTTTGTTGGAGATCGTTTTCGAGGATGGTCATTGCGAGGAGATGGAAGTTTCTGAGGTGGTTTCGTTGCTGGAAATTCAACCGGAGGTGGTGAAAGTCAAAGCTAGGGTTGGCCGGGAACCTAAAAAACGACACCGCACCGCCGAGACGACATCATGTTCAGGTAGTGGTAGTGATAATTTGGTGGCGGGTAGTGAAATTAACGGGATTTTGAATAGTGATGATGGTTCTAGTGGCGGGAATGATGGGGATGTTGTGGGAAATGGGAATGGGAGTGATGGAAAAGTAGGTAGTGGAAATCCGTTTGGTTTTGAAGAGATTTCAAATTTGAATGGGGGTGTTTCTGATATTAATGCTTATGGAATTTGTGTTAAAGATGATGTTGATTTGAATGGTAGTGTTAATTTGAATGATAATGGGATTTTTGTTAAAGATGGTGTTGATTTGAATTCTAGGGTTAATTTGAATGGGAATGAGGGTGTTTTTGATAATAATGATAATGGGATTTGTGTTAAGGATGATATTGATTTGAATGCTAGGGTTAATTTGAATGAGGATATGGATTTAAATGATGTGTATGATTTGAATTTTGATAACGAGGGTGGTTTGGAGAGAAGAGAAGGTATTGATTTGAATTTGGATGTGAATGGTGATGAGGGTGTGAATTTGGATGCGAATTTGGGAGGGGAAATATTGCGGCGGGAATGTAAATTTGATTTGAATGTGGGGGTGTGTGAAGAAGTTAAGGAGGTTCAGGGTTGTGCTGAAGGAAATGAGCATTTTGAGGTAAATGGTGAGACGGGTCAGCTGGGAGAAGTTGGGTTAGATGTTGAGCATAGGTCTATGGAAGTTGATGGTGTTCGTGGTGATTTGGATTGTGTCTCTGATGCTGTCAAATCAGAGGAATTTCGTGTTTCGGTTGAGAATATAGCTGAAGGCGCTTCTTTGTGTTTGATTGAGGAAAAGGAAAGTCATGATGGCAAAGAAAATGTAGCGGCTATTGACTCTCCTATGGTTCTGGATGGTCTTTCTGGTGAAAATGTGGCGGCTATTGACTCTCCTATGGTTCTAGATGGTGTTTCTGTTCGGGATTGTGATTATGTTTCCTTGGAAACTGGTGTTGCAGTAGTTAATGAATGCCAAGATGATCCAGGAAGTCCATGCAAACAAGAAAGTAGTCAGAGGAAGAGAAGAAAAGTCTCAAATAATTCAAAAGCCACCCCGGAAACGGCTTTGAGGAGGAGTTCTCGCCGGGTGTCAGCTAGAAAACAGGCGCAGGTGACCGATGATCCTCTGTCGTCCTTGGAAACCAGTGTAACAGAAGAAAAACCTTCAATGCCTGGAAGTGAGAAATACGAACAGTGCAATGTTCCTATTCCGAAGCTGCAATTACCCCCTTCTTCTAAAAATTTGCATTTAGATGACATTCCTGTTCTTGAATTTTTTTCTGTCTATGCTTATTTAAGATCATTCAGTACCTTGTTATTTTTGAGTCCATTTGAGTTGGAAGATTTTGTGGCTGCACTTAAGTCTGAAATCCCTAGTATATTACTTGACAACATTTATGTTTCTATTTTGCACACTCTGAGAAAGCATTTGGAATTCCTTTCCAGTGAGGGTTGCCAATCTGCATCCATTTGCCTGAGGAATCTTAACTGGGATTTCTTGGACCTTGTCACATGGCCCATGTTCATGGCCGAGTACCTTCTGATTCACAGTTCTGAATTTAAAATTAGTTTTGATGCTAACCACTCAATTTTAGGAACCGACTACTACAAACAACCTGTCAATTTGAAGCTTGAGATTCTTCAGTACCTTTGTGATGATATGATTGAAACAGACACCATAAGGGCAGAGATGAACAGAAGATCTTTGGTAATAGAGACCGGTATGGGTTTTGATCAGAATATTTATTTTGACACTGGTAAGAAAAAAAGAGCTGCAATGGATGTTTCTGGTGGCTCTTGCTTGACCGAGGAGATTGTGGATGACACAACTGACTTGAACAGTGATGAATGTTGCCTTTGCAAGATGGATGGAAATTTAATATGTTGTGATGGTTGCCCTGCTGCATTCCACTCAAGGTGTGTCGGGATTGCAAGTGACAGTCTTCCTGAAGGTGACTGGTATTGCCCGGAGTGTGCTATTGGCACACACCGGGCTTCGATGAAATCACGAAGATCACTTCGAGGAGCAGACTTGTTGGGGATGGATCCTCACGGCTGTCTTTATTTTGATAGCTGTGGTTACCTGTTAGTTTCAAACTCATCAGATGCGGGGTCCTTGTTCAATTACTACCATAGAAATGATATACATGTTGTAATTGAAGTTCTAAAGTCTATGGGTGCTTTATATGGAGACTTATTAATGACTATCTGCAAGCACTGGGATCTTCCGTCTGACTTAAATGCAGAGGCTAGTAGTTTGGCAGTCTTCAATCGAAGTTCCTGCAAGAACATGCAAATGACGGCGGAATATTATGCTACGCCTACATCTTTAGCACCTTTTACTTCTTCAGAACCATGCATGGGCAAGAATCTGGTTGATGATCACAAAAAGTTGAAGAAAAATTCCACTATTGACTGTTGTATTCAAGATGGCCAAGACTTTCCAAAAGCTGGGAACCAATTAGACTCAACAATAGGAAGTCCTGGTATTGCCTCAAAAGGATCAGCTGATACTGCACAATTGAGATCAGGCATCGAGAGTATTCCGATGCACAGGCTATATGATTCCAATAGATCCATAGCTGTTAGCAGTACCGCTGGCAATGAGGATACATCACAGGCATCTTATGGGACCGACTACATAAACTATTACAGCCTTGCCAGGGTGCCCTCATTAGTTGCGCAGGAATTGATGTGTAAGTCACCTGAAAAGATCAATAAAAATATTGGTTTGACTGAGGAAGATGTTATTTCAGACCAAACAAAGTCTATCATGAAGAAGTCCAGCAACTTTTGTTGGCCAAGTATTCAAAACCTGAATGCAGCTGCCCAAATGGAAAAATGTGGGTGGTGCTTTTCTTGCAAGGTTGCAAATGATGGCAGAGATTGCTTGTACATTTCGGTGGTGAAACCTCTTAATGAAGTGTCTAAAAGTACTTCAGTTGAGCTTCAACCCAGGAAGATCCAGAATGGACATCTTAGAGCGATAATATGTCATATTTTCTCTCTTGAGGTTCGACTGCGGGGTCTTTTATTGGGTCCATGGTTGAATCTCCATCAAACAAATCTTTGGCATGAAGATCTTTTGAAGACATTCGATTTTCTTTCTGTCAAACGAGTATTGCTTCTTTTGGAATCCAATTTGAGACATCGTGCTCTTTCAGCCGATTGGTTAAAGCATGTGGATTCTGTGGGTACTATGGGATCAGCTACTCATATTGTGGTCAATTTATCACGAACATCCTCAAAGCATGGTGTTGGAAAGAAAAGGGCCAGACATTCGGATATTGAATCCAGTTCATCTTCAAAGACTACTGGTGGTTTGGTAATGTATTGGTCAAGAGGTGGTAGGCTTTCCCGAAAGTTGTTTAATTGGAAGGTCCTGCCTCGCTCCTTCGTTGCTAAAGCTGCTAGACAAGTTTTAAATTCTGCAGCTGGGTTTACAAAGATACCAGGTATTTTATATCCTGAAAATTCAGACTTTGCAAAGAGAAGCAGATGTGTTGCCTGGCGAGCTGCTGTCGAGATGTCAACTAGTGTTGAGCAGTTGGCTTTACAGGTCAGAGAACTCTATTCAAACATAAGGTGGCATGATATTGAGAATAGCCATCCTTTACATGTATTGGACAAGGAATCTAAAAAATCAGTCAGGCTATTCAAAAAAGCAATTGTACGCAGGAAGTGCACCGAAGGACAATCTGTGAAATACCTTCTTGATTTTGGGAAGAGAAGAGGTATTCCAGATGTTATTGTTAAACACGGTTCGCTGTTGGAGCAACCCTCAAGTGAGAGGAAAACATATTGGCTGAACGAGTCTTATGTTCCTTTGCATCTTGTAAAGAATTTTGAGGAAAAAATAATTGTCCGCAAGTCCAATGATAAGAAACATGGAAAAATTCTTGAGATCGGTAGAGTAAAGAAGGCTCCTCAACAACGGGGTTTTTCATATTTGTTTTCTAGAATGGAAAGATCTGAATGTCATCAGTGTGGGCATTGCAACAAAGATGTCCCAATCAGGGAAGCTGTGAGCTGCATTTATTGCAAAGGGCATTTCCATAAGAGGCATGCCAGGAAATCTGGTGGCACAAAAGCTGCTGAATTCACATATTCATGTCACAAATGCCAGGACGGGTTGCATGTGAAGACTAATACTAATAGAAGGAATGTTGACTCAAAACGGCAGAAGATTCAATCACAGAATGGTAAAAGTTCCCCTTTGGTTGGTAAATCAGTGAACCTTAAAGGCAACAAAAAGGCATCAAGTAAGGTGCCGCAGCCGCGGGTAATATCTCGAAACAATAAGAACATCCCACCAATTGTACCTCTTCGCCGTTCTACTAGGAAGGCCAAATCCTTATATCTGCACAAGCAAAAGATTGGAGGGCGTAAAAAAGGAACACAAAGTAAAAAGAATGTAGGGCGTAAAAAAGGAAAGCAAAGTAAATCCAAGGTGGTGACTTCTCAAAGGTCCAAGGGAACTACTGGTCAACATAAAATGTTTGCAGTAACTCCGGCACGTAAGACAAGAACAAAACTTTTTAACTGTTACTGGCTTAAAGGTCTCCGGTTTTCTCAAAAGCCAAATGATGAACGTGTGATGCTTTTTAAAGAGAAAAAGCATATTATCTCCGATGTTTCTACTGGTTTGTTTGAATATCCTGAATGCTGCCTTCGCTGTGGAGATGTATCTGCTTCAAATTATATTGCTTGTGAAATCTGTGAAGATTGGTTTCATGGGGATGCTTTTGGTCTCACTGTAGAGAATGCCAGACAGCTTATTGGGTTTAGGTGCCATGCTTGTCGTGGTAGCATTGCTCCGATCTGTCCCCATGTAAAGAATAATACTCCGTCTCCTACTGACCCAATGCTGTAA 5127 0.4119 MEFVGKTIQKSVDDGGILTGTVKSHNSSSGLLEIVFEDGHCEEMEVSEVVSLLEIQPEVVKVKARVGREPKKRHRTAETTSCSGSGSDNLVAGSEINGILNSDDGSSGGNDGDVVGNGNGSDGKVGSGNPFGFEEISNLNGGVSDINAYGICVKDDVDLNGSVNLNDNGIFVKDGVDLNSRVNLNGNEGVFDNNDNGICVKDDIDLNARVNLNEDMDLNDVYDLNFDNEGGLERREGIDLNLDVNGDEGVNLDANLGGEILRRECKFDLNVGVCEEVKEVQGCAEGNEHFEVNGETGQLGEVGLDVEHRSMEVDGVRGDLDCVSDAVKSEEFRVSVENIAEGASLCLIEEKESHDGKENVAAIDSPMVLDGLSGENVAAIDSPMVLDGVSVRDCDYVSLETGVAVVNECQDDPGSPCKQESSQRKRRKVSNNSKATPETALRRSSRRVSARKQAQVTDDPLSSLETSVTEEKPSMPGSEKYEQCNVPIPKLQLPPSSKNLHLDDIPVLEFFSVYAYLRSFSTLLFLSPFELEDFVAALKSEIPSILLDNIYVSILHTLRKHLEFLSSEGCQSASICLRNLNWDFLDLVTWPMFMAEYLLIHSSEFKISFDANHSILGTDYYKQPVNLKLEILQYLCDDMIETDTIRAEMNRRSLVIETGMGFDQNIYFDTGKKKRAAMDVSGGSCLTEEIVDDTTDLNSDECCLCKMDGNLICCDGCPAAFHSRCVGIASDSLPEGDWYCPECAIGTHRASMKSRRSLRGADLLGMDPHGCLYFDSCGYLLVSNSSDAGSLFNYYHRNDIHVVIEVLKSMGALYGDLLMTICKHWDLPSDLNAEASSLAVFNRSSCKNMQMTAEYYATPTSLAPFTSSEPCMGKNLVDDHKKLKKNSTIDCCIQDGQDFPKAGNQLDSTIGSPGIASKGSADTAQLRSGIESIPMHRLYDSNRSIAVSSTAGNEDTSQASYGTDYINYYSLARVPSLVAQELMCKSPEKINKNIGLTEEDVISDQTKSIMKKSSNFCWPSIQNLNAAAQMEKCGWCFSCKVANDGRDCLYISVVKPLNEVSKSTSVELQPRKIQNGHLRAIICHIFSLEVRLRGLLLGPWLNLHQTNLWHEDLLKTFDFLSVKRVLLLLESNLRHRALSADWLKHVDSVGTMGSATHIVVNLSRTSSKHGVGKKRARHSDIESSSSSKTTGGLVMYWSRGGRLSRKLFNWKVLPRSFVAKAARQVLNSAAGFTKIPGILYPENSDFAKRSRCVAWRAAVEMSTSVEQLALQVRELYSNIRWHDIENSHPLHVLDKESKKSVRLFKKAIVRRKCTEGQSVKYLLDFGKRRGIPDVIVKHGSLLEQPSSERKTYWLNESYVPLHLVKNFEEKIIVRKSNDKKHGKILEIGRVKKAPQQRGFSYLFSRMERSECHQCGHCNKDVPIREAVSCIYCKGHFHKRHARKSGGTKAAEFTYSCHKCQDGLHVKTNTNRRNVDSKRQKIQSQNGKSSPLVGKSVNLKGNKKASSKVPQPRVISRNNKNIPPIVPLRRSTRKAKSLYLHKQKIGGRKKGTQSKKNVGRKKGKQSKSKVVTSQRSKGTTGQHKMFAVTPARKTRTKLFNCYWLKGLRFSQKPNDERVMLFKEKKHIISDVSTGLFEYPECCLRCGDVSASNYIACEICEDWFHGDAFGLTVENARQLIGFRCHACRGSIAPICPHVKNNTPSPTDPML* 1709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2358 1708 MobiDBLite consensus disorder prediction 1533 1567 - -
Mtr4g2358 1708 MobiDBLite consensus disorder prediction 79 114 - -
Mtr4g2358 1708 ProSiteProfiles DDT domain profile. 504 564 IPR018501 -
Mtr4g2358 1708 MobiDBLite consensus disorder prediction 1568 1582 - -
Mtr4g2358 1708 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 618 650 IPR028942 -
Mtr4g2358 1708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1636 1691 IPR013083 -
Mtr4g2358 1708 MobiDBLite consensus disorder prediction 408 480 - -
Mtr4g2358 1708 CDD PHD1_AIRE 701 743 - -
Mtr4g2358 1708 Pfam PHD-finger 702 744 IPR019787 -
Mtr4g2358 1708 MobiDBLite consensus disorder prediction 1468 1583 - -
Mtr4g2358 1708 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 1 1701 - -
Mtr4g2358 1708 Pfam DDT domain 508 560 IPR018501 -
Mtr4g2358 1708 PANTHER PHD FINGER FAMILY PROTEIN 1 1701 - -
Mtr4g2358 1708 SMART testlast3 504 564 IPR018501 -
Mtr4g2358 1708 SMART PHD_3 701 744 IPR001965 -
Mtr4g2358 1708 SMART PHD_3 1413 1460 IPR001965 -
Mtr4g2358 1708 SMART PHD_3 1640 1686 IPR001965 -
Mtr4g2358 1708 MobiDBLite consensus disorder prediction 1169 1189 - -
Mtr4g2358 1708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 693 760 IPR013083 -
Mtr4g2358 1708 MobiDBLite consensus disorder prediction 1479 1517 - -
Mtr4g2358 1708 MobiDBLite consensus disorder prediction 455 473 - -
Mtr4g2358 1708 MobiDBLite consensus disorder prediction 66 126 - -
Mtr4g2358 1708 SUPERFAMILY FYVE/PHD zinc finger 1637 1686 IPR011011 -
Mtr4g2358 1708 ProSitePatterns Zinc finger PHD-type signature. 702 743 IPR019786 -
Mtr4g2358 1708 ProSiteProfiles Zinc finger PHD-type profile. 699 746 IPR019787 -
Mtr4g2358 1708 SUPERFAMILY FYVE/PHD zinc finger 686 745 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2358 Mtr-Chr4 37133996 37150385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2358 1 1700 PHD Transcription Factor Family AT5G12400 38.734 0.0 1026
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Mtr4g2358 DDT 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2358 - - mtr:MTR_4g076180 3368.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2358 4 37133996 37150385 Mtr4g2358 4 37133996 37150385 ECH