Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2346 ATGGAAGCTTTGTTCCTCACGAAACCAATTTCTCACTTCAAACCCAAACACTCTCTATCTCCCAAACACCCATTTGAATTTCACCACCACCACCACCACCACCAATCTCTCACTCTCCGCCACAAACCCACCAAACTTCCCACCGTCACCACCGCAACTCAAAACCACCAACAACAACAAGAACAAGAACAAACAACACCCAAAACCATCGAAGATGAAGAACCCTACGGCGAAGTCAAAAAAATTATCGGAAGCAAAGCCTTGGAAGATTCCACCGGCATGGAATATCTCATCGAATGGGAAGATGGCCATCAACCTTCCTGGGTCCCCGCCGACTTCATAGCAAAAGACGTCGTCGCTGAATACGAAACTCCCTGGTGGACCGCCGCTAGAAAATCCGACGAAAATGCCCTCAAAACAATCCTTGAAGCCGACGATTACCGCGACGTAAATGCAGTAGACTCTGATGGTAGAACAGCACTTCTATTTGTAGCTGGCCTCGGCTCAGAGCCATGCGTTAGGCTCTTAGCCGAAGCTGGCGCCAATTTAGACCACCGCGATAATAGCGGTGGTCTATCCGCGCTGCACATGGCAGCCGGATATGTAAGACCTGGAGTAGCAAAACTACTCTTGGAACTCGGTGCTGATCCGGAAATTAGCGACGATCGTGGAAGAACAGCGTTGGATTTAGCGAGGGAGTTGTTAAAAGCGACGCCAAAGGGGAACCCAATGCAATTCGGAAGAAGAATGGGGTTAGAAGGTGTGGTTAGGGTTTTAGAAGGTGCAGTGTTTGAATATGCTGAAGTAGAGGAGATTATGGAGAAGAGAGGGAAAGGTGAGAATTTGGAGTATTTGGTGAAATGGAAAGATGGAAGTGCTAATGAGTGGATTAAGGGGAGGTTTGTGGCGGAGGATTTGGTGAGGGATTATGAAGCTGGGCTTGAATATGCGGTGGCGGAAGCGGTGGTTGGTCGGAGAGTTGGTGATGATGGGAAGTATGAGTTTTTGGTGAAATGGGTTGATTTGGATGAACCCACTTGGGAGCCCGAGGAGAATGTTGATTCTGAGCTTGTTAAAGTGTTTGATTTGAGTAATAATCAAGCTCAGCCTGGTAATGATAATGGGGTTTCTACGGTTGATTTGAGTCAGAATAGTTCAAATATTGTTAGTGCATGA 1176 0.4728 MEALFLTKPISHFKPKHSLSPKHPFEFHHHHHHHQSLTLRHKPTKLPTVTTATQNHQQQQEQEQTTPKTIEDEEPYGEVKKIIGSKALEDSTGMEYLIEWEDGHQPSWVPADFIAKDVVAEYETPWWTAARKSDENALKTILEADDYRDVNAVDSDGRTALLFVAGLGSEPCVRLLAEAGANLDHRDNSGGLSALHMAAGYVRPGVAKLLLELGADPEISDDRGRTALDLARELLKATPKGNPMQFGRRMGLEGVVRVLEGAVFEYAEVEEIMEKRGKGENLEYLVKWKDGSANEWIKGRFVAEDLVRDYEAGLEYAVAEAVVGRRVGDDGKYEFLVKWVDLDEPTWEPEENVDSELVKVFDLSNNQAQPGNDNGVSTVDLSQNSSNIVSA* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2346 391 MobiDBLite consensus disorder prediction 41 65 - -
Mtr4g2346 391 MobiDBLite consensus disorder prediction 14 73 - -
Mtr4g2346 391 ProSiteProfiles Chromo and chromo shadow domain profile. 317 353 IPR000953 -
Mtr4g2346 391 SUPERFAMILY Chromo domain-like 72 126 IPR016197 -
Mtr4g2346 391 MobiDBLite consensus disorder prediction 15 40 - -
Mtr4g2346 391 SUPERFAMILY Ankyrin repeat 121 233 IPR036770 -
Mtr4g2346 391 SMART ANK_2a 156 185 IPR002110 GO:0005515
Mtr4g2346 391 SMART ANK_2a 190 219 IPR002110 GO:0005515
Mtr4g2346 391 SMART ANK_2a 121 152 IPR002110 GO:0005515
Mtr4g2346 391 MobiDBLite consensus disorder prediction 368 391 - -
Mtr4g2346 391 ProSiteProfiles Ankyrin repeat region circular profile. 190 222 - -
Mtr4g2346 391 Gene3D - 313 363 - -
Mtr4g2346 391 CDD CD3_cpSRP43_like 314 363 - -
Mtr4g2346 391 ProSiteProfiles Ankyrin repeat profile. 190 222 IPR002110 GO:0005515
Mtr4g2346 391 PANTHER HOMEOBOX PROTEIN WARIAI 1 367 - -
Mtr4g2346 391 SUPERFAMILY Chromo domain-like 319 361 IPR016197 -
Mtr4g2346 391 ProSiteProfiles Ankyrin repeat profile. 156 188 IPR002110 GO:0005515
Mtr4g2346 391 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 1 367 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Mtr4g2346 391 Gene3D - 121 262 IPR036770 -
Mtr4g2346 391 SMART chromo_7 316 366 IPR000953 -
Mtr4g2346 391 SMART chromo_7 265 315 IPR000953 -
Mtr4g2346 391 SMART chromo_7 76 127 IPR000953 -
Mtr4g2346 391 Pfam Chromo (CHRromatin Organisation MOdifier) domain 319 359 IPR023780 -
Mtr4g2346 391 ProSiteProfiles Chromo and chromo shadow domain profile. 267 296 IPR000953 -
Mtr4g2346 391 SUPERFAMILY Chromo domain-like 265 312 IPR016197 -
Mtr4g2346 391 Pfam Ankyrin repeats (many copies) 176 231 IPR002110 GO:0005515
Mtr4g2346 391 ProSiteProfiles Ankyrin repeat region circular profile. 156 188 - -
Mtr4g2346 391 Gene3D - 74 120 - -
Mtr4g2346 391 Gene3D - 263 312 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2346 151 231 CAMTA Transcription Factor Family AT5G09410 40.449 2.16e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2346 K12271 - gmx:100818382 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2346 4 36931982 36933427 Mtr4g2346 4 36931982 36933427 ECH